Stomatological Hospital, Southern Medical University, Guangzhou 510280, China.
Dis Markers. 2022 Jun 15;2022:6410113. doi: 10.1155/2022/6410113. eCollection 2022.
Head and neck squamous cell carcinomas (HNSC) are common malignant tumors with a high occurrence and poor prognosis. Tumor protein P73 (TP73) plays an integral role in a wide range of human malignancies, but its gene expression profile, prognostic value, and potential mechanisms in HNSC remain to be comprehensively explored.
This research aimed to elucidate the potential relationship between TP73 and HNSC through bioinformatics analysis.
The Cancer Genome Atlas (TCGA) database was queried to investigate the regulatory role of TP73 in HNSC. The survival probabilities linked to TP73 mRNA were determined via the Kaplan-Meier analysis using R packages. Subsequently, the association of TP73 with several clinical subgroups and immunological subtypes was studied using a cohort from the TCGA-HNSC. Functional analyses were used to identify the potential signaling pathways enriched by the correlated genes of TP73. The relationship between TP73 and immunological aspects, including immune cells, immune inhibitor genes, immune stimulator genes, and tumor immune microenvironment, were investigated.
This study showed that the protein and mRNA levels of TP73 in HNSC patients were significantly higher than those in normal tissues. Elevated TP73 expression was related to a better survival outcome in HNSC patients. The TP73 gene was an independent prognostic factor for overall survival in HNSC samples. TP73 was mainly involved in DNA replication, ribosome, apoptosis, mismatch repair, and folate biosynthesis. TP73 was found to be positively correlated with the majority of tumor infiltrating immune cells and immunoinhibitory genes in HNSC.
Integrative bioinformatics and statistical analyses displayed that TP73 might serve as a novel marker for the diagnosis and prognosis of HNSC. TP73 modulates immune cells in the tumor microenvironment of HNSC patients, thereby bearing significance for HNSC immunotherapy.
头颈部鳞状细胞癌(HNSC)是一种常见的恶性肿瘤,发病率高,预后差。肿瘤蛋白 P73(TP73)在广泛的人类恶性肿瘤中发挥着重要作用,但它在 HNSC 中的基因表达谱、预后价值和潜在机制仍有待全面探讨。
本研究旨在通过生物信息学分析阐明 TP73 与 HNSC 之间的潜在关系。
查询癌症基因组图谱(TCGA)数据库以研究 TP73 在 HNSC 中的调节作用。使用 R 包通过 Kaplan-Meier 分析确定与 TP73 mRNA 相关的生存概率。随后,使用来自 TCGA-HNSC 的队列研究了 TP73 与几个临床亚组和免疫亚型的关联。功能分析用于确定与 TP73 相关基因富集的潜在信号通路。研究了 TP73 与免疫方面的关系,包括免疫细胞、免疫抑制剂基因、免疫刺激基因和肿瘤免疫微环境。
本研究表明,HNSC 患者的 TP73 蛋白和 mRNA 水平明显高于正常组织。升高的 TP73 表达与 HNSC 患者的生存结局较好相关。TP73 基因是 HNSC 样本总生存期的独立预后因素。TP73 主要参与 DNA 复制、核糖体、细胞凋亡、错配修复和叶酸生物合成。TP73 与 HNSC 中大多数肿瘤浸润免疫细胞和免疫抑制基因呈正相关。
综合生物信息学和统计分析显示,TP73 可能作为 HNSC 诊断和预后的新标志物。TP73 调节 HNSC 患者肿瘤微环境中的免疫细胞,因此对 HNSC 免疫治疗具有重要意义。