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冰川微生物组的基因组和基因目录。

A genome and gene catalog of glacier microbiomes.

机构信息

Center for Pan-third Pole Environment, Lanzhou University, Lanzhou, China.

State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China.

出版信息

Nat Biotechnol. 2022 Sep;40(9):1341-1348. doi: 10.1038/s41587-022-01367-2. Epub 2022 Jun 27.

Abstract

Glaciers represent a unique inventory of microbial genetic diversity and a record of evolution. The Tibetan Plateau contains the largest area of low-latitude glaciers and is particularly vulnerable to global warming. By sequencing 85 metagenomes and 883 cultured isolates from 21 Tibetan glaciers covering snow, ice and cryoconite habitats, we present a specialized glacier microbial genome and gene catalog to archive glacial genomic and functional diversity. This comprehensive Tibetan Glacier Genome and Gene (TG2G) catalog includes 883 genomes and 2,358 metagenome-assembled genomes, which represent 968 candidate species spanning 30 phyla. The catalog also contains over 25 million non-redundant protein-encoding genes, the utility of which is demonstrated by the exploration of secondary metabolite biosynthetic potentials, virulence factor identification and global glacier metagenome comparison. The TG2G catalog is a valuable resource that enables enhanced understanding of the structure and functions of Tibetan glacial microbiomes.

摘要

冰川代表了微生物遗传多样性的独特存量,也是进化的记录。青藏高原拥有最大面积的低纬度冰川,特别容易受到全球变暖的影响。通过对来自青藏高原 21 条冰川的 85 个宏基因组和 883 个培养分离物进行测序,涵盖了雪、冰和冰核土壤生境,我们提供了一个专门的冰川微生物基因组和基因目录,以记录冰川的基因组和功能多样性。这个全面的青藏高原冰川基因组和基因(TG2G)目录包括 883 个基因组和 2358 个宏基因组组装基因组,代表了跨越 30 个门的 968 个候选物种。该目录还包含超过 2500 万个非冗余的蛋白质编码基因,通过探索次生代谢物生物合成潜力、毒力因子鉴定和全球冰川宏基因组比较,展示了这些基因的实用性。TG2G 目录是一个有价值的资源,使我们能够更好地理解青藏高原冰川微生物组的结构和功能。

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