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在区块链上存储和分析基因组。

Storing and analyzing a genome on a blockchain.

机构信息

Program in Computational Biology and Bioinformatics, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.

Department of Molecular Biophysics and Biochemistry, Yale University, Whitney Avenue, New Haven, CT, 06520, USA.

出版信息

Genome Biol. 2022 Jun 29;23(1):134. doi: 10.1186/s13059-022-02699-7.

Abstract

There are major efforts underway to make genome sequencing a routine part of clinical practice. A critical barrier to these is achieving practical solutions for data ownership and integrity. Blockchain provides solutions to these challenges in other realms, such as finance. However, its use in genomics is stymied due to the difficulty in storing large-scale data on-chain, slow transaction speeds, and limitations on querying. To overcome these roadblocks, we developed a private blockchain network to store genomic variants and reference-aligned reads on-chain. It uses nested database indexing with an accompanying tool suite to rapidly access and analyze the data.

摘要

目前正在做出重大努力,将基因组测序纳入临床实践的常规部分。实现数据所有权和完整性的实际解决方案是实现这些目标的关键障碍。区块链在金融等其他领域为这些挑战提供了解决方案。然而,由于难以在链上存储大规模数据、交易速度慢以及查询受限,其在基因组学中的应用受到阻碍。为了克服这些障碍,我们开发了一个私有区块链网络,将基因组变异和参考比对读取存储在链上。它使用嵌套数据库索引和配套工具套件来快速访问和分析数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c8fc/9241283/818e6ade6761/13059_2022_2699_Fig1_HTML.jpg

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