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对花提取物反应的转录组学特征分析

Transcriptomic Profile Analysis of Response to Flower Extracts.

作者信息

Abd Ghafar Siti Aisyah, Salehuddin Nur Syahirah, Abdul Rahman Nor Zaihana, Halib Nadia, Mohamad Hanafiah Rohazila

机构信息

Department of Basic Science and Oral Biology, Faculty of Dentistry, Universiti Sains Islam Malaysia, Kuala Lumpur 55100, Malaysia.

出版信息

Evid Based Complement Alternat Med. 2022 Jun 21;2022:7767940. doi: 10.1155/2022/7767940. eCollection 2022.

Abstract

BACKGROUND

has been used as a traditional medicine to treat oral health diseases such as dental caries and periodontitis. is a common bacterium that initiates dental caries at an early stage.

AIM

The aim of this study was to determine the mode of action of . (extracts) against . growth.

METHODS

Time-kill assay has been done to investigate the rate of kill and effectiveness of (AP) extracts against . growth. Phytochemical analysis was done to identify major compounds in AP extracts using gas chromatography mass spectrometry (GCMS). Scanning and transmission electron microscopy (SEM and TEM) have been done to observe the morphological changes of treated bacteria. Transcriptomic profile analysis has been done using Next Gene Sequencing.

RESULTS

AP flower n-hexane (APFH) and AP flower dichloromethane (APFD) extracts acted as bactericidal agents after killing >3 log10 cfu/mL of after 24 hours. Oleic and hexadecenoic acids were found to be the major compounds in APFD and APFH extracts, respectively. Photomicrographs from SEM and TEM of treated . show that the bacterial cell wall has been lysed and the cytoplasm content was decreased. Pathway analysis revealed that the APFD extract significantly affected biosynthesis peptidoglycan, gene expression, RNA processing, and macromolecule metabolism processes in . .

CONCLUSION

Data analysis revealed that multiple mechanisms of action were involved in antibacterial activity of . extracts toward . .

摘要

背景

已被用作治疗龋齿和牙周炎等口腔健康疾病的传统药物。是一种在早期引发龋齿的常见细菌。

目的

本研究的目的是确定提取物对细菌生长的作用模式。

方法

进行了时间杀菌试验,以研究提取物对细菌生长的杀灭速率和有效性。使用气相色谱 - 质谱联用仪(GCMS)进行植物化学分析,以鉴定提取物中的主要化合物。进行了扫描和透射电子显微镜(SEM和TEM)观察处理后细菌的形态变化。使用下一代基因测序进行转录组图谱分析。

结果

24小时后,花正己烷提取物(APFH)和花二氯甲烷提取物(APFD)在杀灭超过3 log10 cfu/mL的细菌后,起到了杀菌剂的作用。分别发现油酸和十六碳烯酸是APFD和APFH提取物中的主要化合物。处理后的细菌的SEM和TEM显微照片显示,细菌细胞壁已被裂解,细胞质含量减少。通路分析表明,APFD提取物显著影响细菌中的肽聚糖生物合成、基因表达、RNA加工和大分子代谢过程。

结论

数据分析表明,提取物对细菌的抗菌活性涉及多种作用机制。

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