加州生物多样性数据库：加州动植物区系的遗传和生活史数据库。

CaliPopGen: A genetic and life history database for the fauna and flora of California.

机构信息

UCLA La Kretz Center for California Conservation Science, Institute of the Environment and Sustainability, University of California, Los Angeles, CA, 90095, USA.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.

出版信息

Sci Data. 2022 Jul 5;9(1):380. doi: 10.1038/s41597-022-01479-z.

DOI:10.1038/s41597-022-01479-z

PMID:35790740

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9256587/

Abstract

CaliPopGen is a database of population genetic data for native and naturalized eukaryotic species in California, USA. It summarizes the published literature (1985-2020) for 5,453 unique populations with genetic data from more than 187,394 individuals and 448 species (513 species plus subspecies) across molecular markers including allozymes, RFLPs, mtDNA, microsatellites, nDNA, and SNPs. Terrestrial habitats accounted for the majority (46.4%) of the genetic data. Taxonomic groups with the greatest representation were Magnoliophyta (20.31%), Insecta (13.4%), and Actinopterygii (12.85%). CaliPopGen also reports life-history data for most included species to enable analyses of the drivers of genetic diversity across the state. The large number of populations and wide taxonomic breadth will facilitate explorations of ecological patterns and processes across the varied geography of California. CaliPopGen covers all terrestrial and marine ecoregions of California and has a greater density of species and georeferenced populations than any previously published population genetic database. It is thus uniquely suited to inform conservation management at the regional and state levels across taxonomic groups.

摘要

CaliPopGen 是一个美国加利福尼亚州本土和归化真核生物种群遗传数据的数据库。它总结了 1985 年至 2020 年的文献（1985-2020），其中包括来自超过 187394 个人和 448 个物种（513 个物种加亚种）的遗传数据，分子标记包括等位酶、RFLP、mtDNA、微卫星、nDNA 和 SNPs。陆地生境占遗传数据的大部分（46.4%）。分类群中代表性最大的是木兰植物门（20.31%）、昆虫纲（13.4%）和硬骨鱼纲（12.85%）。CaliPopGen 还报告了大多数包含物种的生活史数据，以便能够分析全州遗传多样性的驱动因素。大量的种群和广泛的分类群将有助于探索加利福尼亚多样化地理环境中的生态模式和过程。CaliPopGen 涵盖了加利福尼亚州的所有陆地和海洋生态区，其物种密度和地理参考种群比以前发表的任何种群遗传数据库都要高。因此，它非常适合为分类群的区域和州级保护管理提供信息。