Department of Biotechnology, Era's Lucknow Medical College, Era University, Sarfarazganj, Hardoi Road, Lucknow, 226003, UP, India.
J Mol Model. 2022 Jul 6;28(8):212. doi: 10.1007/s00894-022-05213-9.
The recent outbreak "Coronavirus Disease 2019 (COVID-19)" is caused by fast-spreading and highly contagious severe acute respiratory syndrome coronavirus 2 (SARS-CoV2). This virus enters into the human respiratory system by binding of the viral surface spike glycoprotein (S-protein) to an angiotensin-converting enzyme2 (ACE2) receptor that is found in the nasal passage and oral cavity of a human. Both spike protein and the ACE2 receptor have been identified as promising therapeutic targets to develop anti-SARS-CoV2 drugs. No therapeutic drugs have been developed as of today except for some vaccines. Therefore, potent therapeutic agents are urgently needed to combat the COVID-19 infections. This goal would be achieved only by applying drug repurposing and computational approaches. Thus, based on drug repurposing approach, we have investigated 16 bioactive components (1-16) from different nasal spray solutions to check their efficacies against human ACE2 and SARS-CoV2 spike proteins by performing molecular docking and molecular dynamic (MD) simulation studies. In this study, three bioactive components namely ciclesonide (8), levocabastine (13), and triamcinolone acetonide (16) have been found as promising inhibitory agents against SARS-CoV2 spike and human ACE2 receptor proteins with excellent binding affinities, comparing to reference drugs such as nafamostat, arbidol, losartan, and benazepril. Furthermore, MD simulations were performed (triplicate) for 100 ns to confirm the stability of 8, 13, and 16 with said protein targets and to compute MM-PBSA-based binding-free energy calculations. Thus, bioactive components 8, 13, and 16 open the door for researchers and scientist globally to investigate them against SARS-CoV2 through in vitro and in vivo analysis.
最近爆发的“2019 年冠状病毒病(COVID-19)”是由传播速度快且具有高度传染性的严重急性呼吸系统综合征冠状病毒 2(SARS-CoV2)引起的。该病毒通过病毒表面刺突糖蛋白(S-蛋白)与人类鼻腔和口腔中发现的血管紧张素转换酶 2(ACE2)受体结合,进入人体呼吸系统。刺突蛋白和 ACE2 受体已被确定为开发抗 SARS-CoV2 药物的有前途的治疗靶点。除了一些疫苗外,目前还没有开发出任何治疗药物。因此,迫切需要有效的治疗药物来对抗 COVID-19 感染。只有通过应用药物再利用和计算方法才能实现这一目标。因此,基于药物再利用方法,我们研究了来自不同鼻喷雾剂的 16 种生物活性成分(1-16),通过进行分子对接和分子动力学(MD)模拟研究,检查它们对人类 ACE2 和 SARS-CoV2 刺突蛋白的功效。在这项研究中,发现三种生物活性成分(环索奈德(8)、左卡巴斯汀(13)和曲安奈德(16))是对抗 SARS-CoV2 刺突和人类 ACE2 受体蛋白的有前途的抑制剂,与对照药物如那法莫司他、阿比朵尔、洛沙坦和贝那普利相比,具有优异的结合亲和力。此外,还进行了 MD 模拟(重复 3 次)100ns,以确认 8、13 和 16 与所述蛋白质靶标结合的稳定性,并计算基于 MM-PBSA 的结合自由能计算。因此,生物活性成分 8、13 和 16 为研究人员和科学家提供了机会,使他们能够通过体外和体内分析来研究它们对 SARS-CoV2 的作用。