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莳萝(伞形科)的完整叶绿体基因组序列

The complete chloroplast genome sequence of Diels (Apiaceae).

作者信息

Ciren Dunzhu, Fan Chen, Liu Xiang, Zhang Zhiwei, Wang Jiashui, Cao Lan

机构信息

University of Tibetan Medicine, Lhasa, China.

School of Medicine and Chemical Engineering, Yangling Vocational & Technical College, Xianyang, Shsaanxi, China.

出版信息

Mitochondrial DNA B Resour. 2022 Jun 30;7(6):1058-1060. doi: 10.1080/23802359.2022.2086073. eCollection 2022.

Abstract

We assembled the complete chloroplast genome of which is a traditional widely used medicinal plant in China. The whole genome is 150,025 bp in length which was divided into four subregions: a large single-copy region (93,645 bp), a pair of 19,458 bp inverted repeats regions, and a small single-copy region (17,464 bp), respectively. Additionally, the chloroplast genome of detected 128 genes, including 85 protein coding genes, 36 transfer RNAs, and eight ribosomal RNAs. The overall GC content of this chloroplast genome is 37.5% and the mean coverage value is 1752.4x. Phylogenetic analysis based on 17 chloroplast genomes dataset was conducted to clarify the relationships of the major clades in Apiaceae. The results strongly supported the monophyly of and the closer relationship of and .

摘要

我们组装了中国一种传统上广泛使用的药用植物的完整叶绿体基因组。其全基因组长度为150,025 bp,分为四个亚区:一个大单拷贝区(93,645 bp)、一对19,458 bp的反向重复区和一个小单拷贝区(17,464 bp)。此外,该植物的叶绿体基因组检测到128个基因,包括85个蛋白质编码基因、36个转运RNA和8个核糖体RNA。该叶绿体基因组的总体GC含量为37.5%,平均覆盖值为1752.4x。基于17个叶绿体基因组数据集进行了系统发育分析,以阐明伞形科主要分支之间的关系。结果有力地支持了该植物的单系性以及它与另一植物的密切关系。 (注:原文中部分植物名称未给出具体内容,用“”表示)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1735/9255025/4123077449ac/TMDN_A_2086073_F0001_B.jpg

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