Department of Commerce and Trade, Nanjing Vocational University of Industry Technology, Nanjing, 210023, China.
College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China.
Funct Integr Genomics. 2023 May 31;23(2):192. doi: 10.1007/s10142-023-01121-0.
Achillea is a crop with Chinese herbal characteristics and horticultural values. Its leaves and flowers contain aromatic oil, and the ripe herb can also be used as medicine to induce sweat and relieve rheumatic pains. It is seen cultivated in gardens all over China. Currently, the most comprehensive chloroplast genome sample involved in the study refers to New World clades of Achillea, which are used for marker selection and phylogenetic research. We completely sequenced the chloroplast genomes of Achillea millefolium. These sequencing results showed that the plastid genome is 149,078 bp in size and possesses a typical quadripartite structure containing one large single copy (LSC) with 82,352 bp, one small single copy (SSC) with 18,426 bp, and a pair of inverted repeat (IR) regions with 24,150 bp in Achillea millefolium. The chloroplast genome encodes a common number of genes, of which 88 are protein-coding genes, 37 transfer ribonucleic acid genes, and 8 ribosomal ribonucleic acid genes, which are highly similar in overall size, genome structure, gene content, and sequence. The exact similarity was observed when compared to other Asteraceae species. However, there were structural differences due to the restriction or extension of the inverted repeat (IR) regions-the palindromic repeats being the most prevalent form. Based on 12 whole-plastomes, 3 hypervariable regions (rpoB, rbcL, and petL-trnP-UGG) were discovered, which could be used as potential molecular markers.
蓍草是一种具有中草药特征和园艺价值的作物。它的叶子和花含有芳香油,成熟的植株也可以入药,用于发汗和解除风湿疼痛。在中国各地的花园中都可以看到它的栽培。目前,研究中涉及的最全面的叶绿体基因组样本来自新世界的蓍草属植物,这些样本被用于标记选择和系统发育研究。我们完全对蓍草的叶绿体基因组进行了测序。这些测序结果表明,质体基因组大小为 149078bp,具有典型的四分体结构,包含一个长的单拷贝区(LSC),大小为 82352bp,一个小的单拷贝区(SSC),大小为 18426bp,以及一对大小为 24150bp 的反向重复区(IR)。叶绿体基因组编码了一组常见数量的基因,其中 88 个是蛋白质编码基因,37 个转移核糖核酸基因和 8 个核糖体核糖核酸基因,在总体大小、基因组结构、基因内容和序列上高度相似。与其他菊科物种相比,相似度非常高。然而,由于反向重复(IR)区域的限制或扩展,存在结构差异——回文重复是最常见的形式。基于 12 个完整的质体基因组,发现了 3 个超可变区域(rpoB、rbcL 和 petL-trnP-UGG),可作为潜在的分子标记。