Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand.
Natural Products and Nanoparticles Research Unit (NP), Chulalongkorn University, Bangkok, 10330, Thailand.
Int J Syst Evol Microbiol. 2022 Jul;72(7). doi: 10.1099/ijsem.0.005447.
A novel actinomycete strain PM05-2 was isolated from the lichen (Nyl.) Hale collected from Chaiyaphum Province, Thailand. The taxonomic position of the strain was studied using the polyphasic approach. Based on the morphology and chemotaxonomic properties, strain PM05-2 was identified as a member of the genus . The whole-cell hydrolysate contained -diaminopimelic acid, rhamnose, ribose, xylose, madurose, glucose and galactose. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol, phosphatidylinositol mannoside, one unidentified phosphoglycolipid, four unidentified phospholipids and one unidentified lipid. The menaquinones were MK-9(H), MK-9(H), MK-9(H), MK-9(H) and MK-9(H). The major cellular fatty acids were C and C ω9. Strain PM05-2 showed the highest 16S rRNA gene similarity to NBRC 15177 (98.58%), NBRC 14229 (98.29 %) and DSM 44197 (98.14 %). The phylogenetic tree analysis revealed that strain PM05-2 was related to NBRC 15177, NBRC 14229, DSM 44197 and RB68. The genomic analysis revealed that average nucleotide identity values based on both blast and MUMmer between strain PM05-2 and the relative type strains ranged from 77.6 to 86.4%. The digital DNA-DNA hybridization values among the strains were lower than the threshold for assigning to the same species. The taxonomic results suggested that strain PM05-2 represented a novel species of the genus for which the name is proposed. The type strain is PM05-2 (=TBRC 15492=NBRC 115416).
一株新型放线菌 PM05-2 菌株从泰国猜也蓬府采集的地衣(Nyl.)Hale 中分离得到。该菌株的分类地位采用多相分类法进行研究。根据形态和化学生态特征,菌株 PM05-2 被鉴定为 属的成员。全细胞水解物含有 -二氨基庚二酸、鼠李糖、核糖、木糖、马杜糖、葡萄糖和半乳糖。极性脂类为磷脂酰甘油、双磷脂酰甘油、磷脂酰肌醇、磷脂酰肌醇甘露糖苷、一种未鉴定的磷酸甘油糖脂、四种未鉴定的磷脂和一种未鉴定的脂类。主要的甲基萘醌为 MK-9(H)、MK-9(H)、MK-9(H)、MK-9(H)和 MK-9(H)。主要的细胞脂肪酸为 C 和 C ω9。菌株 PM05-2 与 NBRC 15177(98.58%)、NBRC 14229(98.29%)和 DSM 44197(98.14%)的 16S rRNA 基因相似度最高。系统发育树分析表明,菌株 PM05-2 与 NBRC 15177、NBRC 14229、DSM 44197 和 RB68 关系最为密切。基因组分析表明,基于 blast 和 MUMmer 的平均核苷酸同一性值在菌株 PM05-2 和相对模式菌株之间的范围为 77.6% 到 86.4%。菌株之间的数字 DNA-DNA 杂交值低于同一物种分配的阈值。分类学结果表明,菌株 PM05-2 代表了 属的一个新种,建议命名为 。模式菌株为 PM05-2(=TBRC 15492=NBRC 115416)。