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染色体 15 上的一个基因座导致协同杂交小鼠急性臭氧诱导的肺损伤。

A Locus on Chromosome 15 Contributes to Acute Ozone-induced Lung Injury in Collaborative Cross Mice.

机构信息

Department of Genetics.

Curriculum in Genetics and Molecular Biology, and.

出版信息

Am J Respir Cell Mol Biol. 2022 Nov;67(5):528-538. doi: 10.1165/rcmb.2021-0326OC.

Abstract

Ozone (O)-induced respiratory toxicity varies considerably within the human population and across inbred mouse strains, indicative of gene-environment interactions (GxE). Though previous studies have identified several quantitative trait loci (QTL) and candidate genes underlying responses to O exposure, precise mechanisms of susceptibility remain incompletely described. We sought to update our understanding of the genetic architecture of O responsiveness using the Collaborative Cross (CC) recombinant inbred mouse panel. We evaluated hallmark O-induced inflammation and injury phenotypes in 56 CC strains after exposure to filtered air or 2 ppm O, and performed focused genetic analysis of variation in lung injury, as reflected by protein in lung lavage fluid. Strain-dependent responses to O were clear, and QTL mapping revealed two novel loci on Chr (Chromosomes) 10 (peak, 26.2 Mb; 80% confidence interval [CI], 24.6-43.6 Mb) and 15 (peak, 47.1 Mb; 80% CI, 40.2-54.9 Mb), the latter surpassing the 95% significance threshold. At the Chr 15 locus, C57BL/6J and CAST/EiJ founder haplotypes were associated with higher lung injury responses compared with all other CC founder haplotypes. With further statistical analysis and a weight of evidence approach, we delimited the Chr 15 QTL to an ∼2 Mb region containing 21 genes (10 protein coding) and nominated three candidate genes, namely , , and . Gene and protein expression data further supported and as priority candidate genes. In summary, we have shown that O-induced lung injury is modulated by genetic variation, identified two high priority candidate genes, and demonstrated the value of the CC for detecting GxE.

摘要

臭氧(O)诱导的呼吸毒性在人群和近交系小鼠中差异很大,表明存在基因-环境相互作用(GxE)。尽管先前的研究已经确定了几个数量性状基因座(QTL)和候选基因,这些基因和候选基因是对 O 暴露反应的基础,但易感性的确切机制仍未完全描述。我们试图使用合作杂交(CC)重组近交系小鼠品系更新我们对 O 反应遗传结构的理解。我们评估了 56 个 CC 品系在暴露于过滤空气或 2ppm O 后标志性的 O 诱导的炎症和损伤表型,并对肺损伤的变异进行了集中的遗传分析,这反映在肺灌洗液中的蛋白质上。对 O 的反应存在明显的品系依赖性,QTL 图谱显示在 Chr(染色体)10(峰,26.2Mb;80%置信区间[CI],24.6-43.6Mb)和 15(峰,47.1Mb;80%CI,40.2-54.9Mb)上有两个新的位点,后者超过了 95%的显著性阈值。在 Chr 15 位点上,与其他所有 CC 品系的起始单倍型相比,C57BL/6J 和 CAST/EiJ 起始单倍型与更高的肺损伤反应相关。通过进一步的统计分析和证据权重方法,我们将 Chr 15 QTL 限定在一个包含 21 个基因(10 个蛋白质编码)的约 2Mb 区域内,并提名了三个候选基因,即、和。基因和蛋白质表达数据进一步支持和作为优先候选基因。总之,我们已经表明,O 诱导的肺损伤受遗传变异的调节,确定了两个高优先级的候选基因,并证明了 CC 用于检测 GxE 的价值。

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