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3750 份越南京族脐血样本中 HLA-A、-B、-C 和-DRB1 基因的等位基因和单倍型频率。

Allele and Haplotype Frequencies of HLA-A, -B, -C, and -DRB1 Genes in 3,750 Cord Blood Units From a Kinh Vietnamese Population.

机构信息

Stem Cell Bank, National Institute of Hematology and Blood Transfusion, Pham Van Bach, Cau Giay, Hanoi, Vietnam.

Department of Hematology, Hanoi Medical University, 1 Ton That Tung, Dong Da, Hanoi, Vietnam.

出版信息

Front Immunol. 2022 Jun 29;13:875283. doi: 10.3389/fimmu.2022.875283. eCollection 2022.

Abstract

The frequencies and diversities of human leukocyte antigen (HLA) alleles and haplotypes are representative of ethnicities. Matching HLA alleles is essential for many clinical applications, including blood transfusion, stem cell transplantation, and tissue/organ transplantation. To date, the information about the frequencies and distributions of HLA alleles and haplotypes among the Kinh Vietnamese population is limited because of the small sample size. In this study, more than 3,750 cord blood units from individuals belonging to the Kinh Vietnamese population were genotyped using PCR sequence-specific oligonucleotide (PCR-SSO) for HLA testing. The results of the study demonstrated that the most frequently occurring HLA-A, -B, -C, and -DRB1 alleles were A11:01 (25%), A24:02 (12.3%), A02:01 (11.2); A03:03 (8.95%), A02:03 (7.81%), A29:01 (7.03%); B15:02 (15.1%), B46:01 (10.7%), B58:01 (7.65%), B38:02 (7.29%); C08:01 (17.2), C07:02 (16.2%), C01:02 (15.2), C03:02 (8.3%), C15:05 (6.13); DRB112:02 (31.0%), DRB109:01 (10.47%), DRB115:02 (7.54%); DRB107:01 (6.68%), DRB110:01 (6.63%), respectively, with the highest allele diversity level observed in locus B (93 alleles). The most frequent haplotypes of two-locus combinations of HLA-A-B, HLA-A-C, HLA-A-DRB1, HLA-B-C, HLA-B-DRB1, and HLA-C-DRB1 haplotypes were A11:01-B15:02 (7.63%), A11:01-C08:01 (7.98%), A11:01-DRB112:02 (10.56%), B15:02-C08:01 (14.0%), B15:02-DRB112:02 (10.47%), and C08:01-DRB112:02 (11.38%), respectively. In addition, the most frequent haplotypes of three- and four-locus sets of HLA-A-B-C, HLA-A-B-DRB1, HLA-A-C-DRB1, HLA-B-C-DRB1, and HLA-A-B-C-DRB1 were A11:01-B15:02-C08:01 (7.57%), A11:01-B15:02-DRB112:02 (5.39%), A11:01-C08:01-DRB112:02 (5.54%), B15:02-C08:01-DRB112:02 (10.21%), and A11:01-B15:02-C08:01-DRB112:02 (5.45%), respectively. This study provides critical information on the frequencies and distributions of HLA alleles and haplotypes in the Kinh Vietnamese population, accounting for more than 85% of Vietnamese citizens. It paves the way to establish an umbilical cord blood bank for cord blood transplantation programs in Vietnam.

摘要

该研究对 3750 多份属于京族人群的脐带血样本进行了 HLA 基因分型检测,使用的方法是聚合酶链反应-序列特异性寡核苷酸(PCR-SSO)。结果表明,京族人群中最常见的 HLA-A、-B、-C 和-DRB1 等位基因分别为 A11:01(25%)、A24:02(12.3%)、A02:01(11.2%)、A03:03(8.95%)、A02:03(7.81%)、A29:01(7.03%);B15:02(15.1%)、B46:01(10.7%)、B58:01(7.65%)、B38:02(7.29%)、C08:01(17.2%)、C07:02(16.2%)、C01:02(15.2%)、C03:02(8.3%)、C15:05(6.13%);DRB112:02(31.0%)、DRB109:01(10.47%)、DRB115:02(7.54%)、DRB107:01(6.68%)、DRB110:01(6.63%)。HLA-A-B、HLA-A-C、HLA-A-DRB1、HLA-B-C、HLA-B-DRB1 和 HLA-C-DRB1 双等位基因中最常见的单倍型分别为 A11:01-B15:02(7.63%)、A11:01-C08:01(7.98%)、A11:01-DRB112:02(10.56%)、B15:02-C08:01(14.0%)、B15:02-DRB112:02(10.47%)和 C08:01-DRB112:02(11.38%)。此外,HLA-A-B-C、HLA-A-B-DRB1、HLA-A-C-DRB1、HLA-B-C-DRB1 和 HLA-A-B-C-DRB1 四等位基因中最常见的单倍型分别为 A11:01-B15:02-C08:01(7.57%)、A11:01-B15:02-DRB112:02(5.39%)、A11:01-C08:01-DRB112:02(5.54%)、B15:02-C08:01-DRB112:02(10.21%)和 A11:01-B15:02-C08:01-DRB112:02(5.45%)。本研究提供了京族人群 HLA 等位基因和单倍型频率和分布的关键信息,该人群占越南公民的 85%以上。本研究为越南建立脐带血库以用于脐带血移植项目奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ce/9277059/321f317b297d/fimmu-13-875283-g001.jpg

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