• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

淮河刀鲚(鲱形目,鳀科)线粒体基因组全序列特征及其系统发育地位

Characterization of the complete mitochondrial genome sequence of (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position.

作者信息

Tian Yuan, Yang Tiezhu, Yang Shijie, Wang Leping, Zhao Liangjie, Sun Wenhao

机构信息

School of Fisheries, Xinyang Agriculture and Forestry University, Xinyang, China.

Fishery Biological Engineering Technology Research Center of Henan Province, Xinyang, China.

出版信息

Mitochondrial DNA B Resour. 2022 Jul 12;7(7):1288-1290. doi: 10.1080/23802359.2022.2097487. eCollection 2022.

DOI:10.1080/23802359.2022.2097487
PMID:35844973
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9278443/
Abstract

The complete mitogenome sequence of (Kreyenberg & Pappenheim, 1908) from Wabu Lake in Huai River Basin was annotated and characterized in this study. This mitochondrial genome is a circular DNA molecule of 16.896 bp in size with 57.52% AT content, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and an AT-rich region (control region) as other bony fishes. There are a total of 10 overlap locations and 15 intergenic spacer regions throughout the mitogenome of . All PCGs employed a standard ATG as a start codon, except cytochrome c oxidase 1 (cox1) with GTG. In addition, TAA or TAG was identified as the typical stop codon. A phylogenetic tree reconstructed with the maximum likelihood method depicted a clone relationship with eight species of genus and our previous study based on the amino acid sequences of 13 mitochondrial PCGs. The complete mitochondrial genome is a valuable resource in classifying and conserving .

摘要

本研究对采自淮河流域瓦埠湖的(克雷恩贝格和帕彭海姆,1908年)的完整线粒体基因组序列进行了注释和特征分析。该线粒体基因组是一个大小为16,896 bp的环状DNA分子,AT含量为57.52%,与其他硬骨鱼类一样,包括13个蛋白质编码基因(PCGs)、两个核糖体RNA基因(rRNAs)、22个转移RNA基因(tRNAs)和一个富含AT的区域(控制区)。在该物种的线粒体基因组中共有10个重叠位置和15个基因间隔区。除细胞色素c氧化酶1(cox1)以GTG作为起始密码子外,所有PCGs均以标准的ATG作为起始密码子。此外,TAA或TAG被确定为典型的终止密码子。用最大似然法重建的系统发育树显示,基于13个线粒体PCGs的氨基酸序列,该物种与该属的8个物种以及我们之前的研究呈现出克隆关系。完整的线粒体基因组是该物种分类和保护的宝贵资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e19/9278443/ca8984c16bff/TMDN_A_2097487_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e19/9278443/ca8984c16bff/TMDN_A_2097487_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e19/9278443/ca8984c16bff/TMDN_A_2097487_F0001_C.jpg

相似文献

1
Characterization of the complete mitochondrial genome sequence of (Clupeiformes, Engraulidae) from Huai River and its phylogenetic position.淮河刀鲚(鲱形目,鳀科)线粒体基因组全序列特征及其系统发育地位
Mitochondrial DNA B Resour. 2022 Jul 12;7(7):1288-1290. doi: 10.1080/23802359.2022.2097487. eCollection 2022.
2
The complete mitochondrial genome of Coilia brachygnathus (Clupeiformes: Engraulidae: Coilinae).短颌鲚(鲱形目:鳀科:鲚属)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4084-4085. doi: 10.3109/19401736.2014.1003855. Epub 2015 Jan 28.
3
The Complete Mitochondrial Genome Sequences of the (Stylommatophora: Philomycidae) and Phylogenetic Analysis.(柄眼目:烟管蜗牛科)的完整线粒体基因组序列及系统发育分析。
Genes (Basel). 2019 Mar 5;10(3):198. doi: 10.3390/genes10030198.
4
Characterization of the complete mitochondrial genome sequence of and phylogenetic analysis.[物种名称]线粒体全基因组序列的特征分析及系统发育分析。 (注:原文中“of”后面缺少具体物种名称)
Mitochondrial DNA B Resour. 2023 Feb 2;8(2):207-210. doi: 10.1080/23802359.2023.2171244. eCollection 2023.
5
The complete mitochondrial genome of Coilia grayii (Clupeiformes: Engraulidae).灰鲚(鲱形目:鳀科)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3175-6. doi: 10.3109/19401736.2015.1007323. Epub 2015 Feb 19.
6
The Complete Mitochondrial Genome of the Beet Webworm, Spoladea recurvalis (Lepidoptera: Crambidae) and Its Phylogenetic Implications.甜菜夜蛾(鳞翅目:草螟科)线粒体全基因组及其系统发育意义
PLoS One. 2015 Jun 19;10(6):e0129355. doi: 10.1371/journal.pone.0129355. eCollection 2015.
7
The complete mitochondrial genome of and (Hemiptera, Pentatomidae) and its phylogenetic implications.某蝽科(半翅目)的线粒体全基因组及其系统发育意义
Zookeys. 2023 May 9;1160:145-167. doi: 10.3897/zookeys.1160.100818. eCollection 2023.
8
The complete mitochondrial genome of Coilia nasus (Clupeiformes: Engraulidae) from Ariake Sea.来自有明海的刀鲚(鲱形目:鳀科)线粒体全基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):1518-9. doi: 10.3109/19401736.2014.953119. Epub 2014 Sep 18.
9
The complete mitogenome of Coilia nasus (Clupeiformes, Engraulidae) from Poyang Lake.来自鄱阳湖的刀鲚(鲱形目,鳀科)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):1608-9. doi: 10.3109/19401736.2014.958691. Epub 2014 Sep 10.
10
Characterization of the complete mitochondrial genome sequence of (Lepidoptera: Sphingidae).(鳞翅目:天蛾科)线粒体全基因组序列的特征分析
Mitochondrial DNA B Resour. 2023 Jan 15;8(1):130-132. doi: 10.1080/23802359.2022.2163597. eCollection 2023.

本文引用的文献

1
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.IQ-TREE 2:基因组时代系统发育推断的新模型和有效方法。
Mol Biol Evol. 2020 May 1;37(5):1530-1534. doi: 10.1093/molbev/msaa015.
2
Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes.提高后生动物线粒体基因组中编码蛋白基因边界的注释。
Nucleic Acids Res. 2019 Nov 18;47(20):10543-10552. doi: 10.1093/nar/gkz833.
3
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.
PartitionFinder 2:用于选择分子和形态系统发育分析进化分区模型的新方法。
Mol Biol Evol. 2017 Mar 1;34(3):772-773. doi: 10.1093/molbev/msw260.
4
The complete mitochondrial genome of Coilia brachygnathus (Clupeiformes: Engraulidae: Coilinae).短颌鲚(鲱形目:鳀科:鲚属)的完整线粒体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4084-4085. doi: 10.3109/19401736.2014.1003855. Epub 2015 Jan 28.