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作为肽合成酶结构域中通信传感器的全局蛋白质动力学

Global protein dynamics as communication sensors in peptide synthetase domains.

作者信息

Mishra Subrata H, Kancherla Aswani K, Marincin Kenneth A, Bouvignies Guillaume, Nerli Santrupti, Sgourakis Nikolaos, Dowling Daniel P, Frueh Dominique P

机构信息

Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

Laboratoire des Biomolécules (LBM), Département de Chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, Paris, France.

出版信息

Sci Adv. 2022 Jul 15;8(28):eabn6549. doi: 10.1126/sciadv.abn6549.

Abstract

Biological activity is governed by the timely redistribution of molecular interactions, and static structural snapshots often appear insufficient to provide the molecular determinants that choreograph communication. This conundrum applies to multidomain enzymatic systems called nonribosomal peptide synthetases (NRPSs), which assemble simple substrates into complex metabolites, where a dynamic domain organization challenges rational design to produce new pharmaceuticals. Using a nuclear magnetic resonance (NMR) atomic-level readout of biochemical transformations, we demonstrate that global structural fluctuations help promote substrate-dependent communication and allosteric responses, and impeding these global dynamics by a point-site mutation hampers allostery and molecular recognition. Our results establish global structural dynamics as sensors of molecular events that can remodel domain interactions, and they provide new perspectives on mechanisms of allostery, protein communication, and NRPS synthesis.

摘要

生物活性受分子相互作用的适时重新分布支配,而静态结构快照往往显得不足以提供编排通信的分子决定因素。这个难题适用于称为非核糖体肽合成酶(NRPSs)的多结构域酶系统,该系统将简单底物组装成复杂代谢物,其动态结构域组织对合理设计以生产新药物构成挑战。利用核磁共振(NMR)对生化转化的原子水平读出,我们证明全局结构波动有助于促进底物依赖性通信和变构反应,而通过点突变阻碍这些全局动态会妨碍变构和分子识别。我们的结果将全局结构动力学确立为可重塑结构域相互作用的分子事件的传感器,并为变构、蛋白质通信和NRPS合成机制提供了新的视角。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0911/9286511/6a2e465c00af/sciadv.abn6549-f1.jpg

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