• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在单菌株微生物群落中对细胞表型进行比色控制。

Ratiometric control of cell phenotypes in monostrain microbial consortia.

机构信息

Department of Electrical Engineering and Information Technology, University of Naples Federico II, Via Claudio 21, 80125 Naples, Italy.

Department of Mathematics and Applications 'R. Caccioppoli', University of Naples Federico II, Via Cintia, Monte S. Angelo, 80126 Naples, Italy.

出版信息

J R Soc Interface. 2022 Jul;19(192):20220335. doi: 10.1098/rsif.2022.0335. Epub 2022 Jul 13.

DOI:10.1098/rsif.2022.0335
PMID:35858050
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9277296/
Abstract

We address the problem of regulating and keeping at a desired balance the relative numbers between cells exhibiting a different phenotype within a monostrain microbial consortium. We propose a strategy based on the use of external control inputs, assuming each cell in the community is endowed with a reversible, bistable memory mechanism. Specifically, we provide a general analytical framework to guide the design of external feedback control strategies aimed at balancing the ratio between cells whose memory is stabilized at either one of two equilibria associated with different cell phenotypes. We demonstrate the stability and robustness properties of the control laws proposed and validate them , implementing the memory element via a genetic toggle-switch. The proposed control framework may be used to allow long-term coexistence of different populations, with both industrial and biotechnological applications. As a representative example, we consider the realistic agent-based implementation of our control strategy to enable cooperative bioproduction of a dimer in a monostrain microbial consortium.

摘要

我们解决了在单菌株微生物群落中调节和保持具有不同表型的细胞之间相对数量平衡的问题。我们提出了一种基于使用外部控制输入的策略,假设群落中的每个细胞都具有可逆的双稳态记忆机制。具体来说,我们提供了一个通用的分析框架来指导设计外部反馈控制策略,旨在平衡记忆被稳定在与不同细胞表型相关的两个平衡点之一的细胞的比例。我们证明了所提出的控制律的稳定性和鲁棒性,并通过遗传 toggle-switch 来验证它们,从而实现记忆元件。所提出的控制框架可用于允许不同群体的长期共存,具有工业和生物技术应用。作为一个代表性的例子,我们考虑了我们的控制策略的基于代理的现实实现,以在单菌株微生物群落中实现二聚体的合作生物生产。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/a020ea8513d9/rsif20220335f06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/618e999f5cbf/rsif20220335f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/10492f2e83e6/rsif20220335f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/ae1d10655813/rsif20220335f03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/39b475ec04fb/rsif20220335f04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/e906140dc8ba/rsif20220335f05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/a020ea8513d9/rsif20220335f06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/618e999f5cbf/rsif20220335f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/10492f2e83e6/rsif20220335f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/ae1d10655813/rsif20220335f03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/39b475ec04fb/rsif20220335f04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/e906140dc8ba/rsif20220335f05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b692/9277296/a020ea8513d9/rsif20220335f06.jpg

相似文献

1
Ratiometric control of cell phenotypes in monostrain microbial consortia.在单菌株微生物群落中对细胞表型进行比色控制。
J R Soc Interface. 2022 Jul;19(192):20220335. doi: 10.1098/rsif.2022.0335. Epub 2022 Jul 13.
2
Balancing Cell Populations Endowed with a Synthetic Toggle Switch Adaptive Pulsatile Feedback Control.平衡赋予合成切换开关的细胞群体 自适应脉冲反馈控制
ACS Synth Biol. 2020 Apr 17;9(4):793-803. doi: 10.1021/acssynbio.9b00464. Epub 2020 Mar 20.
3
Biotechnological potential of microbial consortia and future perspectives.微生物群落的生物技术潜力及未来展望。
Crit Rev Biotechnol. 2018 Dec;38(8):1209-1229. doi: 10.1080/07388551.2018.1471445. Epub 2018 May 15.
4
Biotechnological basis of microbial consortia for the removal of pesticides from the environment.微生物群落去除环境中农药的生物技术基础。
Crit Rev Biotechnol. 2021 May;41(3):317-338. doi: 10.1080/07388551.2020.1853032. Epub 2021 Mar 17.
5
Harnessing ecological and evolutionary principles to guide the design of microbial production consortia.利用生态和进化原理指导微生物生产群落的设计。
Curr Opin Biotechnol. 2020 Apr;62:228-238. doi: 10.1016/j.copbio.2019.12.012. Epub 2020 Jan 15.
6
Predicting partner fitness based on spatial structuring in a light-driven microbial community.基于光驱动微生物群落中的空间结构预测伴侣适应性。
PLoS Comput Biol. 2023 May 3;19(5):e1011045. doi: 10.1371/journal.pcbi.1011045. eCollection 2023 May.
7
Emerging strategies for engineering microbial communities.微生物群落工程的新兴策略。
Biotechnol Adv. 2019 Nov 1;37(6):107372. doi: 10.1016/j.biotechadv.2019.03.011. Epub 2019 Mar 15.
8
Interkingdom microbial consortia mechanisms to guide biotechnological applications.跨界微生物联合体机制指导生物技术应用。
Microb Biotechnol. 2018 Sep;11(5):833-847. doi: 10.1111/1751-7915.13300. Epub 2018 Jul 16.
9
Design and engineering of artificial microbial consortia for biohydrogen production.人工微生物群落用于生物制氢的设计与工程。
Curr Opin Biotechnol. 2022 Feb;73:74-80. doi: 10.1016/j.copbio.2021.07.010. Epub 2021 Jul 31.
10
Synthetic microbial consortia for biosynthesis and biodegradation: promises and challenges.合成微生物群落用于生物合成和生物降解:前景与挑战。
J Ind Microbiol Biotechnol. 2019 Oct;46(9-10):1343-1358. doi: 10.1007/s10295-019-02211-4. Epub 2019 Jul 5.

引用本文的文献

1
Multi-Layer Autocatalytic Feedback Enables Integral Control Amidst Resource Competition and Across Scales.多层自催化反馈能够在资源竞争和跨尺度过程中实现积分控制。
ACS Synth Biol. 2025 Apr 18;14(4):1041-1061. doi: 10.1021/acssynbio.4c00575. Epub 2025 Mar 21.
2
Multicellular PID control for robust regulation of biological processes.用于生物过程稳健调节的多细胞比例-积分-微分控制
J R Soc Interface. 2025 Jan;22(222):20240583. doi: 10.1098/rsif.2024.0583. Epub 2025 Jan 29.
3
Structural Identifiability and Observability of Microbial Community Models.

本文引用的文献

1
Dynamic cybergenetic control of bacterial co-culture composition via optogenetic feedback.通过光遗传学反馈实现细菌共培养物组成的动态计算遗传学控制。
Nat Commun. 2022 Aug 16;13(1):4808. doi: 10.1038/s41467-022-32392-z.
2
Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight.利用 ReacSight 增强生物反应器阵列,实现自动化测量和反应控制。
Nat Commun. 2022 Jun 11;13(1):3363. doi: 10.1038/s41467-022-31033-9.
3
A light tunable differentiation system for the creation and control of consortia in yeast.一种用于酵母群落的创建和控制的轻可调差异化系统。
微生物群落模型的结构可识别性与可观测性
Bioengineering (Basel). 2023 Apr 17;10(4):483. doi: 10.3390/bioengineering10040483.
Nat Commun. 2021 Oct 5;12(1):5829. doi: 10.1038/s41467-021-26129-7.
4
Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia.具有合成微生物群落细胞长度控制的紧急时空种群动态。
PLoS Comput Biol. 2021 Sep 22;17(9):e1009381. doi: 10.1371/journal.pcbi.1009381. eCollection 2021 Sep.
5
Automatic synchronisation of the cell cycle in budding yeast through closed-loop feedback control.通过闭环反馈控制自动同步出芽酵母中的细胞周期。
Nat Commun. 2021 Apr 27;12(1):2452. doi: 10.1038/s41467-021-22689-w.
6
Single strain control of microbial consortia.微生物群落的单菌株控制。
Nat Commun. 2021 Mar 30;12(1):1977. doi: 10.1038/s41467-021-22240-x.
7
Feedback Control of an Antithetic Molecular-Titration Motif in Using Microfluidics.使用微流控技术对反义分子滴定基序进行反馈控制。
ACS Synth Biol. 2020 Oct 16;9(10):2617-2624. doi: 10.1021/acssynbio.0c00105. Epub 2020 Oct 2.
8
Majority sensing in synthetic microbial consortia.人工合成微生物群落中的多数决定现象。
Nat Commun. 2020 Jul 21;11(1):3659. doi: 10.1038/s41467-020-17475-z.
9
Enhanced production of heterologous proteins by a synthetic microbial community: Conditions and trade-offs.通过合成微生物群落提高异源蛋白的产量:条件和权衡。
PLoS Comput Biol. 2020 Apr 13;16(4):e1007795. doi: 10.1371/journal.pcbi.1007795. eCollection 2020 Apr.
10
Balancing Cell Populations Endowed with a Synthetic Toggle Switch Adaptive Pulsatile Feedback Control.平衡赋予合成切换开关的细胞群体 自适应脉冲反馈控制
ACS Synth Biol. 2020 Apr 17;9(4):793-803. doi: 10.1021/acssynbio.9b00464. Epub 2020 Mar 20.