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鉴定癌症相关成纤维细胞的基因特征以预测卵巢癌预后

Identification of a Gene Signature of Cancer-Associated Fibroblasts to Predict Prognosis in Ovarian Cancer.

作者信息

Zeng Li, Wang Xuehai, Wang Fengxu, Zhao Xinyuan, Ding Yiqian

机构信息

Department of Obstetrics and Gynecology, Nantong Maternal and Child Health Hospital Affiliated to Nantong University, Nantong, China.

Department of Occupational Medicine and Environmental Toxicology, Nantong Key Laboratory of Environmental Toxicology, School of Public Health, Nantong University, Nantong, China.

出版信息

Front Genet. 2022 Jul 6;13:925231. doi: 10.3389/fgene.2022.925231. eCollection 2022.

Abstract

Ovarian cancer (OvCa) is one of the most widespread malignant tumors, which has the highest morbidity and unsatisfactory clinical outcomes among all gynecological malignancies in the world. Previous studies found that cancer-associated fibroblasts (CAFs) play significant roles in tumor growth, progression, and chemoresistance. In the current research, weighted gene co-expression network analysis (WGCNA), univariable COX regression, and the least absolute shrinkage and selection operator (LASSO) analysis were applied to recognize CAF-specific genes. After multiple bioinformatic analyses, four genes (AXL, GPR176, ITGBL1, and TIMP3) were identified as OvCa-specific CAF markers and used to construct the prognostic signature (CAFRS). Furthermore, the specificity of the four genes' expression was further validated at the single-cell level, which was high-selectively expressed in CAFs. In addition, our results showed that CAFRS is an independent significant risk factor affecting the clinical outcomes of OvCa patients. Meanwhile, patients with higher CAFRS were more likely to establish chemoresistance to platinum. Besides, the CAFRS were notably correlated with well-known signal pathways that were related to tumor progression. In summary, our study identifies four CAF-specific genes and constructs a novel prognostic signature, which may provide more insights into precise prognostic assessment in OvCa.

摘要

卵巢癌(OvCa)是最常见的恶性肿瘤之一,在全球所有妇科恶性肿瘤中发病率最高且临床预后不理想。以往研究发现,癌症相关成纤维细胞(CAFs)在肿瘤生长、进展和化疗耐药中发挥着重要作用。在当前研究中,应用加权基因共表达网络分析(WGCNA)、单变量COX回归和最小绝对收缩和选择算子(LASSO)分析来识别CAF特异性基因。经过多次生物信息学分析,四个基因(AXL、GPR176、ITGBL1和TIMP3)被确定为OvCa特异性CAF标志物,并用于构建预后特征(CAFRS)。此外,这四个基因表达的特异性在单细胞水平上得到进一步验证,它们在CAFs中高选择性表达。此外,我们的结果表明,CAFRS是影响OvCa患者临床预后的独立显著危险因素。同时,CAFRS较高的患者更有可能对铂类产生化疗耐药。此外,CAFRS与众所周知的与肿瘤进展相关的信号通路显著相关。总之,我们的研究鉴定了四个CAF特异性基因并构建了一种新的预后特征,这可能为OvCa的精确预后评估提供更多见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5fb9/9298777/724f224c986a/fgene-13-925231-g001.jpg

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