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多中心研究的综合分析确定了一个基于 WGCNA 的卵巢癌相关成纤维细胞特征。

Integrative Analysis From Multicenter Studies Identifies a WGCNA-Derived Cancer-Associated Fibroblast Signature for Ovarian Cancer.

机构信息

Department of Obstetrics and Gynaecology, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, China.

State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China.

出版信息

Front Immunol. 2022 Jul 8;13:951582. doi: 10.3389/fimmu.2022.951582. eCollection 2022.

Abstract

Cancer-associated fibroblasts (CAFs) are a major contributor to tumor stromal crosstalk in the tumor microenvironment (TME) and boost tumor progression by promoting angiogenesis and lymphangiogenesis. This study aimed to identify prognostic genes associated with CAFs that lead to high morbidity and mortality in ovarian cancer (OC) patients. We performed bioinformatics analysis in 16 multicenter studies (2,742 patients) and identified CAF-associated hub genes using the weighted gene co-expression network analysis (WGCNA). A machine learning methodology was used to identify COL16A1, COL5A2, GREM1, LUM, SRPX, and TIMP3 and construct a prognostic signature. Subsequently, a series of bioinformatics algorithms indicated risk stratification based on the above signature, suggesting that high-risk patients have a worse prognosis, weaker immune response, and lower tumor mutational burden (TMB) status but may be more sensitive to routine chemotherapeutic agents. Finally, we characterized prognostic markers using cell lines, immunohistochemistry, and single-cell sequencing. In conclusion, these results suggest that the CAF-related signature may be a novel pretreatment guide for anti-CAFs, and prognostic markers in CAFs may be potential therapeutic targets to inhibit OC progression.

摘要

癌症相关成纤维细胞(CAFs)是肿瘤微环境(TME)中肿瘤基质串扰的主要贡献者,通过促进血管生成和淋巴管生成来促进肿瘤进展。本研究旨在鉴定与 CAFs 相关的预后基因,这些基因导致卵巢癌(OC)患者的高发病率和死亡率。我们对 16 项多中心研究(2742 名患者)进行了生物信息学分析,并使用加权基因共表达网络分析(WGCNA)鉴定了 CAF 相关的枢纽基因。使用机器学习方法鉴定了 COL16A1、COL5A2、GREM1、LUM、SRPX 和 TIMP3,并构建了预后特征。随后,一系列生物信息学算法基于上述特征进行了风险分层,提示高危患者预后较差、免疫反应较弱、肿瘤突变负荷(TMB)状态较低,但可能对常规化疗药物更敏感。最后,我们使用细胞系、免疫组织化学和单细胞测序来表征预后标志物。总之,这些结果表明,CAF 相关特征可能是一种新的抗 CAFs 的预处理指南,而 CAF 中的预后标志物可能是抑制 OC 进展的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d63c/9304893/7ed773e68f6e/fimmu-13-951582-g001.jpg

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