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What's all the phos about? Insights into the phosphorylation state of the RNA polymerase II C-terminal domain mass spectrometry.磷酸化究竟是怎么回事?关于RNA聚合酶II C末端结构域磷酸化状态的质谱分析见解。
RSC Chem Biol. 2021 Jun 3;2(4):1084-1095. doi: 10.1039/d1cb00083g. eCollection 2021 Aug 5.
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Lysing Yeast Cells with Glass Beads for Immunoprecipitation.用玻璃珠裂解酵母细胞进行免疫沉淀。
Cold Spring Harb Protoc. 2020 Nov 2;2020(11):2020/11/pdb.prot098590. doi: 10.1101/pdb.prot098590.
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The functions and mechanisms of prefoldin complex and prefoldin-subunits.前折叠素复合体和前折叠素亚基的功能与机制。
Cell Biosci. 2020 Jul 20;10:87. doi: 10.1186/s13578-020-00446-8. eCollection 2020.
5
A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.酵母 P 体蛋白的定量目录揭示了组成和特异性的原则。
Elife. 2020 Jun 19;9:e56525. doi: 10.7554/eLife.56525.
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It is all about the process(ing): P-body granules and the regulation of signal transduction.一切都与过程有关:P 体颗粒和信号转导的调节。
Curr Genet. 2020 Feb;66(1):73-77. doi: 10.1007/s00294-019-01016-3. Epub 2019 Jul 17.
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The Chaperonin TRiC/CCT Associates with Prefoldin through a Conserved Electrostatic Interface Essential for Cellular Proteostasis.伴侣蛋白 TRiC/CCT 通过保守的静电界面与 Prefoldin 结合,对细胞的蛋白质稳态至关重要。
Cell. 2019 Apr 18;177(3):751-765.e15. doi: 10.1016/j.cell.2019.03.012. Epub 2019 Apr 4.
8
Signalling through the yeast MAPK Cell Wall Integrity pathway controls P-body assembly upon cell wall stress.酵母 MAPK 细胞壁完整性信号通路在细胞壁应激时控制 P 体的组装。
Sci Rep. 2019 Feb 28;9(1):3186. doi: 10.1038/s41598-019-40112-9.
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Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates.研究液-液相分离和生物分子凝聚物的考虑因素和挑战。
Cell. 2019 Jan 24;176(3):419-434. doi: 10.1016/j.cell.2018.12.035.
10
Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA.Pat1 通过增强 DEAD-box ATP 酶 Dhh1 和 RNA 的相分离促进加工体的组装。
Elife. 2019 Jan 16;8:e41415. doi: 10.7554/eLife.41415.

在酿酒酵母中,微管完整性受到破坏时会诱导形成一种明显的 P 体样颗粒。

A distinct P-body-like granule is induced in response to the disruption of microtubule integrity in Saccharomyces cerevisiae.

机构信息

Department of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.

出版信息

Genetics. 2022 Aug 30;222(1). doi: 10.1093/genetics/iyac105.

DOI:10.1093/genetics/iyac105
PMID:35876801
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9434292/
Abstract

The Processing-body is a conserved membraneless organelle that has been implicated in the storage and/or decay of mRNAs. Although Processing-bodies have been shown to be induced by a variety of conditions, the mechanisms controlling their assembly and their precise physiological roles in eukaryotic cells are still being worked out. In this study, we find that a distinct subtype of Processing-body is induced in response to conditions that disrupt microtubule integrity in the budding yeast, Saccharomyces cerevisiae. For example, treatment with the microtubule-destabilizing agent, benomyl, led to the induction of these novel ribonucleoprotein granules. A link to microtubules had been noted previously and the observations here extend our understanding by demonstrating that the induced foci differ from traditional P-bodies in a number of significant ways. These include differences in overall granule morphology, protein composition, and the manner in which their induction is regulated. Of particular note, several key Processing-body constituents are absent from these benomyl-induced granules, including the Pat1 protein that is normally required for efficient Processing-body assembly. However, these novel ribonucleoprotein structures still contain many known Processing-body proteins and exhibit similar hallmarks of a liquid-like compartment. In all, the data suggest that the disruption of microtubule integrity leads to the formation of a novel type of Processing-body granule that may have distinct biological activities in the cell. Future work will aim to identify the biological activities of these benomyl-induced granules and to determine, in turn, whether these Processing-body-like granules have any role in the regulation of microtubule dynamics.

摘要

处理体是一种保守的无膜细胞器,它与 mRNA 的储存和/或降解有关。虽然已经表明处理体可以被多种条件诱导,但控制其组装的机制及其在真核细胞中的精确生理作用仍在研究中。在这项研究中,我们发现,在破坏 budding yeast(酿酒酵母)微管完整性的条件下,会诱导出一种独特的处理体亚型。例如,用微管破坏剂苯并咪处理会诱导这些新的核糖核蛋白颗粒。以前已经注意到与微管的联系,这里的观察结果通过证明诱导的焦点在许多重要方面与传统的 P 体不同,扩展了我们的理解。这些差异包括总体颗粒形态、蛋白质组成以及其诱导方式的差异。值得特别注意的是,这些苯并咪诱导的颗粒中缺少几个关键的处理体成分,包括通常需要有效处理体组装的 Pat1 蛋白。然而,这些新的核糖核蛋白结构仍然包含许多已知的处理体蛋白,并表现出类似的液态区室特征。总之,数据表明,微管完整性的破坏导致形成一种新型的处理体颗粒,它可能在细胞中有独特的生物学活性。未来的工作将旨在确定这些苯并咪诱导颗粒的生物学活性,并确定这些类似处理体的颗粒是否在微管动力学的调节中起任何作用。