Brunetti Angela, Heungens Kurt, Hubert Jacqueline, Ioos Renaud, Bianchi Gian Luca, De Amicis Francesca, Chandelier Anne, Van Der Linde Sietse, Perez-Sierra Ana, Gualandri Valeria, Silletti Maria Rosaria, Trisciuzzi Vito Nicola, Rimondi Silvia, Baschieri Tiziana, Romano Elio, Lumia Valentina, Luigi Marta, Faggioli Francesco, Pilotti Massimo
Council for Agricultural Research and Economics, Research Centre for Plant Protection and Certification (CREA-DC), 00156 Rome, Italy.
Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), 9940 Merelbeke, Belgium.
J Fungi (Basel). 2022 Jul 26;8(8):778. doi: 10.3390/jof8080778.
(CP), an ascomycetous fungus, is the agent of canker stain, a lethal vascular disease of species. has been listed as a quarantine pest (EPPO A2 list) due to extensive damage caused in Southern Europe and the Mediterranean region. As traditional diagnostic assays are ineffective, a Real-Time PCR detection method based on EvaGreen, SYBR Green, and Taqman assays was previously developed, validated in-house, and included in the official EPPO standard PM7/14 (2). Here, we describe the results of a test performance study performed by nine European laboratories for the purpose of an interlaboratory validation. Verification of the DNA extracted from biological samples guaranteed the high quality of preparations, and the stability and the homogeneity of the aliquots intended for the laboratories. All of the laboratories reproduced nearly identical standard curves with efficiencies close to 100%. Testing of blind-coded DNA extracted from wood samples revealed that all performance parameters-diagnostic sensitivity, diagnostic specificity, accuracy and reproducibility-were best fit in most cases both at the laboratory and at the assay level. The previously established limit of detection, 3 fg per PCR reaction, was also validated with similar excellent results. The high interlaboratory performance of this Real-Time PCR method confirms its value as a primary tool to safeguard -free countries by way of an accurate monitoring, and to investigate the resistance level of potentially canker stain-resistant genotypes.
栗疫病菌(CP)是一种子囊菌,是溃疡病的病原体,溃疡病是一种对多种树种具有致命性的维管束病害。由于其在南欧和地中海地区造成了广泛破坏,已被列为检疫性有害生物(欧洲和地中海植物保护组织A2名单)。由于传统诊断方法无效,此前已开发出一种基于EvaGreen、SYBR Green和Taqman检测法的实时荧光定量PCR检测方法,该方法在内部得到验证,并被纳入欧洲和地中海植物保护组织官方标准PM7/14(2)。在此,我们描述了九个欧洲实验室为进行实验室间验证而开展的测试性能研究结果。对从生物样品中提取的DNA进行验证,确保了制备物的高质量以及提供给各实验室的等分试样的稳定性和均一性。所有实验室都重现了几乎相同的标准曲线,效率接近100%。对从木材样品中提取的编码盲样DNA进行检测发现,在大多数情况下,无论是在实验室层面还是检测层面,所有性能参数——诊断敏感性、诊断特异性、准确性和可重复性——都最为合适。之前确定的每个PCR反应3 fg的检测限也得到验证,结果同样出色。这种实时荧光定量PCR方法在实验室间的高性能证实了其作为一种主要工具的价值,可通过准确监测来保护无该病国家,并调查潜在抗溃疡病基因型的抗性水平。