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口腔中的转座子诱变

Transposon mutagenesis in oral .

作者信息

Zhang Yixin, Li Zhengyi, Xu Xin, Peng Xian

机构信息

State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, Chengdu, Sichuan, China.

Department of Cariology and Endodontics, West China School of Stomatology, Sichuan University, Chengdu, Sichuan, China.

出版信息

J Oral Microbiol. 2022 Jul 24;14(1):2104951. doi: 10.1080/20002297.2022.2104951. eCollection 2022.

Abstract

Oral streptococci are gram-positive facultative anaerobic bacteria that are normal inhabitants of the human oral cavity and play an important role in maintaining oral microecological balance and pathogenesis. Transposon mutagenesis is an effective genetic manipulation strategy for studying the function of genomic features. In order to study cariogenic related genes and crucial biological element genes of oral Streptococcus, transposon mutagenesis was widely used to identify functional genes. With the advent of next-generation sequencing (NGS) technology and the development of transposon random mutation library construction methods, transposon insertion sequencing (TIS) came into being. Benefiting from high-throughput advances in NGS, TIS was able to evaluate the fitness contribution and essentiality of genetic features in the bacterial genome. The application of transposon mutagenesis, including TIS, to oral streptococci provided a massive amount of valuable detailed linkage data between genetic fitness and genetic backgrounds, further clarify the processes of colonization, virulence, and persistence and provides a more reliable basis for investigating relationships with host ecology and disease status. This review focuses on transposon mutagenesis, including TIS, and its applicability in oral streptococci.

摘要

口腔链球菌是革兰氏阳性兼性厌氧细菌,是人类口腔的正常寄居菌,在维持口腔微生态平衡和发病机制中发挥重要作用。转座子诱变是研究基因组特征功能的一种有效遗传操作策略。为了研究口腔链球菌的致龋相关基因和关键生物学元件基因,转座子诱变被广泛用于鉴定功能基因。随着下一代测序(NGS)技术的出现和转座子随机突变文库构建方法的发展,转座子插入测序(TIS)应运而生。受益于NGS的高通量进展,TIS能够评估细菌基因组中遗传特征的适应性贡献和必要性。转座子诱变(包括TIS)在口腔链球菌中的应用提供了大量关于遗传适应性和遗传背景之间有价值的详细连锁数据,进一步阐明了定植、毒力和持续性的过程,并为研究与宿主生态和疾病状态的关系提供了更可靠的基础。本综述重点关注转座子诱变(包括TIS)及其在口腔链球菌中的适用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5600/9318214/d111c7f18f31/ZJOM_A_2104951_F0001_OC.jpg

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