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鉴定关键 microRNA 作为喉鳞状细胞癌的新型诊断标志物。

Identification of Critical miRNAs as Novel Diagnostic Markers for Laryngeal Squamous Cell Carcinoma.

机构信息

Department of Head and Neck Cancer Center, Chongqing University Cancer Hospital, Chongqing 400030, China.

Department of Oncology, Chongqing Hygeia Hospital, Chongqing 400030, China.

出版信息

Dis Markers. 2022 Jul 20;2022:6858411. doi: 10.1155/2022/6858411. eCollection 2022.


DOI:10.1155/2022/6858411
PMID:35909889
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9329032/
Abstract

The prognosis of laryngeal squamous cell carcinoma (LSCC) patients remains poor, and early diagnosis can distinctly improve the long-term survival of LSCC patients. MicroRNAs (miRs) are a group of endogenous, noncoding, 18-24 nucleotide length single-strand RNAs and have been demonstrated to regulate the expression of many genes, thus modulating various cellular biological processes. In this study, we aimed to identify critical diagnostic miRNAs based on two machine learning algorithms. The GSE133632 dataset was acquired from the Gene Expression Omnibus (GEO) datasets, comprising LSCC tissular samples (57 specimens) and matched neighboring healthy mucosa tissular samples (57 specimens). Differentially expressed miRNAs (DEMs) were screened between 57 LSCC specimens and 57 normal specimens. The LASSO regression model and SVM-RFE analysis were carried out for the identification of critical miRNAs. ROC assays were applied to evaluate discriminatory ability. We identified 32 DEMs between LSCC specimens and normal specimens. Two machine learning algorithms confirmed that hsa-miR-615-3p, hsa-miR-4652-5p, hsa-miR-450a-5p, hsa-miR-196a-5p, hsa-miR-21-3p, hsa-miR-139-5p, and hsa-miR-424-5p were critical diagnostic factors. According to the ROC assays, seven miRNAs had an AUC value of >0.85 for LSCC. Taken together, our findings identified seven critical miRNAs in LSCC patients which can be used to diagnose LSCC patients with high sensitivity and specificity. These results must be verified by large-scale prospective studies.

摘要

这项研究旨在基于两种机器学习算法来鉴定关键诊断性miRNAs。我们从基因表达数据库(GEO)中获取了 GSE133632 数据集,包含 57 例喉鳞状细胞癌组织样本和 57 例配对的邻近正常黏膜组织样本。在 57 例 LSCC 标本和 57 例正常标本之间筛选出差异表达的 miRNAs(DEMs)。通过 LASSO 回归模型和 SVM-RFE 分析来鉴定关键 miRNAs。应用 ROC 分析评估鉴别能力。我们在 LSCC 标本和正常标本之间鉴定出 32 个 DEMs。两种机器学习算法均证实 hsa-miR-615-3p、hsa-miR-4652-5p、hsa-miR-450a-5p、hsa-miR-196a-5p、hsa-miR-21-3p、hsa-miR-139-5p 和 hsa-miR-424-5p 是关键的诊断因素。根据 ROC 分析,有 7 个 miRNA 对 LSCC 的 AUC 值>0.85。总之,我们的研究结果鉴定出了 7 个在 LSCC 患者中存在的关键 miRNA,它们可以用于诊断 LSCC 患者,具有较高的灵敏度和特异性。这些结果必须通过大规模的前瞻性研究来验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/a4212c2cd3df/DM2022-6858411.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/5fb5aa9dae0d/DM2022-6858411.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/88c0813e2e54/DM2022-6858411.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/f89e38665d8f/DM2022-6858411.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/a4212c2cd3df/DM2022-6858411.004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/5fb5aa9dae0d/DM2022-6858411.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/88c0813e2e54/DM2022-6858411.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/f89e38665d8f/DM2022-6858411.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f631/9329032/a4212c2cd3df/DM2022-6858411.004.jpg

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引用本文的文献

[1]
Novel miRNA markers and their mechanism of esophageal squamous cell carcinoma (ESCC) based on TCGA.

Sci Rep. 2024-11-8

[2]
From sequencing to validation: NGS-based exploration of plasma miRNA in papillary thyroid carcinoma.

Front Oncol. 2024-8-7

[3]
Gene Expression Profile Identifies LncRNA AL355974.3 As a Potential Glioma Biomarker.

Curr Med Sci. 2024-10

[4]
Identification and validation of N6-methyladenosine (m6A)-related lncRNAs signature for predicting the prognosis of laryngeal carcinoma, especially for smoking patients.

Front Genet. 2023-11-8

[5]
Screening microRNAs as potential prognostic biomarkers for lung adenocarcinoma.

Ann Med. 2023

本文引用的文献

[1]
The prognostic significance of survivin expression in patients with HNSCC: a systematic review and meta-analysis.

BMC Cancer. 2021-4-17

[2]
Tumor microenvironment in head and neck squamous cell carcinoma: Functions and regulatory mechanisms.

Cancer Lett. 2021-6-1

[3]
Head and neck squamous cell carcinoma.

Nat Rev Dis Primers. 2020-11-26

[4]
A MicroRNA Expression Signature as Prognostic Marker for Oropharyngeal Squamous Cell Carcinoma.

J Natl Cancer Inst. 2021-6-1

[5]
Advances in the pharmacotherapeutic management of esophageal squamous cell carcinoma.

Expert Opin Pharmacother. 2021-1

[6]
Progress in miRNA Detection Using Graphene Material-Based Biosensors.

Small. 2019-8-5

[7]
MicroRNA-98-HMGA2-POSTN signal pathway reverses epithelial-to-mesenchymal transition in laryngeal squamous cell carcinoma.

Biomed Pharmacother. 2019-6-15

[8]
The changing therapeutic landscape of head and neck cancer.

Nat Rev Clin Oncol. 2019-6-12

[9]
Molecular genetics of head and neck squamous cell carcinoma.

Curr Opin Oncol. 2019-5

[10]
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Nat Rev Cancer. 2018-3-2

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