School of Biomedical Sciences, Faculty of Biological Sciences & Astbury Centre for Structural and Molecular Biology, University of Leeds, UK.
School of Mechanical Engineering, University of Leeds, Leeds, UK.
Faraday Discuss. 2022 Nov 8;240(0):33-43. doi: 10.1039/d2fd00079b.
Sample preparation is still a significant problem for many single particle cryo-EM workflows and our understanding and developments in the area lag behind that of image processing and microscope design. Over the last few years there has been growing evidence that many of the problems which occur during sample preparation are during the time the sample resides within the thin film created during the conventional blotting process. In parallel, faster grid preparation approaches have been developed for time-resolved cryo-EM experiments allowing for non-equilibrium intermediates to be captured on the ms timescale. Therefore, an important question is how fast can we prepare suitable grids for imaging by cryo-EM and how much does this mitigate the problems observed in sample preparation? Here we use a novel approach which has been developed for time-resolved studies to produce grids on an estimated sub-1 ms timescale. While the method comes with its own challenges, a 3.8 Å reconstruction of apoferritin prepared with the ultrafast method shows that good resolutions can be achieved. Although several orders of magnitude faster than conventional approaches we show using a ribosome sample, that interactions with the air-water interface cannot be avoided with preferred orientations still present. Therefore, the work shows that faster reactions can be captured but poses the question whether speed is the answer to problems with sample preparation.
样品制备仍然是许多单颗粒冷冻电镜工作流程的一个重大问题,我们在该领域的理解和发展落后于图像处理和显微镜设计。过去几年来,越来越多的证据表明,在样品制备过程中发生的许多问题都发生在样品存在于传统印迹过程中形成的薄膜内的时间内。与此同时,为了实现时间分辨冷冻电镜实验,已经开发出了更快的网格制备方法,从而可以在毫秒时间尺度上捕获非平衡中间产物。因此,一个重要的问题是,我们可以多快准备好适合冷冻电镜成像的网格,以及这在多大程度上减轻了在样品制备中观察到的问题?在这里,我们使用一种新的方法,该方法是为时间分辨研究开发的,可以在估计的亚毫秒时间尺度上制备网格。虽然该方法存在自身的挑战,但使用超快方法制备的脱铁蛋白的 3.8 Å 重建表明可以实现良好的分辨率。尽管比传统方法快几个数量级,但我们使用核糖体样品表明,与空气-水界面的相互作用是无法避免的,仍然存在优先取向。因此,这项工作表明可以捕获更快的反应,但提出了一个问题,即速度是否是解决样品制备问题的答案。