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来自刚果民主共和国的毒力基因型 I 非洲猪瘟病毒株 K49 的全基因组序列,该病毒分离自一头家猪(Sus scrofa domesticus)。

Complete genome sequence of virulent genotype I African swine fever virus strain K49 from the Democratic Republic of the Congo, isolated from a domestic pig (Sus scrofa domesticus).

机构信息

Viral Genomics Laboratory, Federal Research Centre for Virology and Microbiology, Academician Bakoulov Street 1, 601125, Volginsky, Vladimir Region, Russia.

Department of Pathobiology and Veterinary Science, Center of Excellence for Vaccine Research, University of Connecticut, Storrs, CT, USA.

出版信息

Arch Virol. 2022 Nov;167(11):2377-2380. doi: 10.1007/s00705-022-05543-2. Epub 2022 Aug 3.

Abstract

African swine fever is one of the most feared infectious diseases in the pig industry. African swine fever virus (ASFV) is an enveloped, cytoplasmic double-stranded DNA virus and the only member of the family Asfarviridae. Although ASFV is known to have been circulating on the African continent since at least 1921, little is known about the genetic characteristics of historical ASFV strains isolated in sub-Saharan Africa. The few complete ASFV genome sequences obtained from African historical isolates have demonstrated genetic diversity, but the available data are limited and insufficient for fully understanding the molecular evolution and continental spread of ASFV. Here, we report the complete genome sequence of the virulent ASFV strain K49, collected during an outbreak in the Belgian Congo (now the Democratic Republic of the Congo) in 1949. The complete genome sequence of ASFV strain K49 was determined using an Illumina HiSeq platform and is 189,523 bp in length with a mean GC content of 38.43%, with 189 genes annotated. This is the first reported complete genome sequence of an ASFV serogroup 2 isolate. Phylogenetic analysis demonstrated genetic divergence within genotype I, and strain K49 formed a separate branch from other ASFV genotype I isolates.

摘要

非洲猪瘟是养猪业最可怕的传染病之一。非洲猪瘟病毒(ASFV)是一种包膜的、细胞质的双链 DNA 病毒,是 Asfarviridae 科的唯一成员。虽然已知 ASFV 自 1921 年以来一直在非洲大陆传播,但对撒哈拉以南非洲分离的历史 ASFV 株的遗传特征知之甚少。从非洲历史分离株中获得的少数完整 ASFV 基因组序列显示出遗传多样性,但现有数据有限,不足以全面了解 ASFV 的分子进化和大陆传播。在这里,我们报告了 1949 年在刚果民主共和国(前比利时刚果)爆发期间采集的强毒 ASFV 株 K49 的完整基因组序列。使用 Illumina HiSeq 平台确定了 ASFV 株 K49 的完整基因组序列,其长度为 189,523 bp,平均 GC 含量为 38.43%,注释了 189 个基因。这是报告的第一个 ASFV 血清 2 分离株的完整基因组序列。系统发育分析表明基因型 I 内存在遗传分歧,株 K49 与其他 ASFV 基因型 I 分离株形成单独的分支。

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