Institute for Bioengineering, School of Engineering, University of Edinburgh, Kings Buildings, EH9 3BF Edinburgh, United Kingdom.
Centre for Synthetic and Systems Biology (SynthSys), University of Edinburgh, Kings Buildings, EH9 3BD Edinburgh, United Kingdom.
ACS Synth Biol. 2022 Aug 19;11(8):2527-2547. doi: 10.1021/acssynbio.1c00442. Epub 2022 Aug 8.
As redesigning organisms using engineering principles is one of the purposes of synthetic biology (SynBio), the standardization of experimental methods and DNA parts is becoming increasingly a necessity. The synthetic biology community focusing on the engineering of has been in the foreground in this area, conceiving several well-characterized SynBio toolkits widely adopted by the community. In this review, the molecular methods and toolkits developed for are discussed in terms of their contributions to the required standardization efforts. In addition, the toolkits designed for emerging nonconventional yeast species including , , and are also reviewed. Without a doubt, the characterized DNA parts combined with the standardized assembly strategies highlighted in these toolkits have greatly contributed to the rapid development of many metabolic engineering and diagnostics applications among others. Despite the growing capacity in deploying synthetic biology for common yeast genome engineering works, the yeast community has a long journey to go to exploit it in more sophisticated and delicate applications like bioautomation.
由于使用工程原理重新设计生物体是合成生物学(SynBio)的目的之一,因此实验方法和 DNA 部件的标准化越来越成为必要。在这一领域,专注于 的工程合成生物学界一直处于前沿地位,构思了几个经过充分表征的 SynBio 工具包,被该领域广泛采用。在本文中,我们将根据这些分子方法和工具包对标准化工作的贡献,对其进行讨论。此外,我们还将对包括 、 、 和 在内的新兴非传统酵母物种的设计工具包进行综述。毫无疑问,这些经过表征的 DNA 部件与这些工具包中设计的标准化组装策略相结合,极大地促进了许多代谢工程和诊断应用等领域的快速发展。尽管在将合成生物学用于常见酵母基因组工程方面的能力不断增强,但在更复杂和精细的应用(如生物自动化)中,酵母界还有很长的路要走。