Biological Design Center, Boston University, Boston, Massachusetts 02215, United States.
Department of Biomedical Engineering, Boston University, Boston, Massachusetts 02215, United States.
ACS Synth Biol. 2023 Nov 17;12(11):3393-3405. doi: 10.1021/acssynbio.3c00423. Epub 2023 Nov 6.
Synthetic biology toolkits are one of the core foundations on which the field has been built, facilitating and accelerating efforts to reprogram cells and organisms for diverse biotechnological applications. The yeast , an important model and industrial organism, has benefited from a wide range of toolkits. In particular, the MoClo Yeast Toolkit (YTK) enables the fast and straightforward construction of multigene plasmids from a library of highly characterized parts for programming new cellular behavior in a more predictable manner. While YTK has cultivated a strong parts ecosystem and excels in plasmid construction, it is limited in the extent and flexibility with which it can create new strains of yeast. Here, we describe a new and improved toolkit, the Multiplex Yeast Toolkit (MYT), that extends the capabilities of YTK and addresses strain engineering limitations. MYT provides a set of new integration vectors and selectable markers usable across common laboratory strains, as well as additional assembly cassettes to increase the number of transcriptional units in multigene constructs, CRISPR-Cas9 tools for highly efficient multiplexed vector integration, and three orthogonal and inducible promoter systems for conditional programming of gene expression. With these tools, we provide yeast synthetic biologists with a powerful platform to take their engineering ambitions to exciting new levels.
合成生物学工具包是该领域建立的核心基础之一,它促进和加速了对细胞和生物体进行重新编程以实现各种生物技术应用的努力。酵母作为一种重要的模式生物和工业生物,已经受益于广泛的工具包。特别是,MoClo 酵母工具包(YTK)能够从高度表征的文库中快速、直接地构建多基因质粒,从而以更可预测的方式编程新的细胞行为。虽然 YTK 培育了强大的部件生态系统,并擅长质粒构建,但它在创建新酵母菌株的程度和灵活性方面存在限制。在这里,我们描述了一个新的改进的工具包,即多路复用酵母工具包(MYT),它扩展了 YTK 的功能并解决了菌株工程的限制。MYT 提供了一组新的整合载体和可选择的标记物,可用于常见的实验室菌株,以及额外的组装盒,以增加多基因构建体中的转录单元数量、用于高效多路复用载体整合的 CRISPR-Cas9 工具,以及三个正交和可诱导的启动子系统,用于基因表达的条件编程。有了这些工具,我们为酵母合成生物学家提供了一个强大的平台,使他们能够将他们的工程雄心提升到令人兴奋的新水平。