Key Laboratory for Opto-Electronic Technology of Jiangsu Province, Nanjing Normal University, Nanjing 210023, China.
School of Electronic Engineering and Optoelectronic Techniques, Nanjing University of Science and Technology, Nanjing 210094, China.
Cells. 2022 Aug 3;11(15):2394. doi: 10.3390/cells11152394.
Optical quantitative phase imaging (QPI) is a frequently used technique to recover biological cells with high contrast in biology and life science for cell detection and analysis. However, the quantitative phase information is difficult to directly obtain with traditional optical microscopy. In addition, there are trade-offs between the parameters of traditional optical microscopes. Generally, a higher resolution results in a smaller field of view (FOV) and narrower depth of field (DOF). To overcome these drawbacks, we report a novel semi-supervised deep learning-based hybrid network framework, termed ContransGAN, which can be used in traditional optical microscopes with different magnifications to obtain high-quality quantitative phase images. This network framework uses a combination of convolutional operation and multiheaded self-attention mechanism to improve feature extraction, and only needs a few unpaired microscopic images to train. The ContransGAN retains the ability of the convolutional neural network (CNN) to extract local features and borrows the ability of the Swin-Transformer network to extract global features. The trained network can output the quantitative phase images, which are similar to those restored by the transport of intensity equation (TIE) under high-power microscopes, according to the amplitude images obtained by low-power microscopes. Biological and abiotic specimens were tested. The experiments show that the proposed deep learning algorithm is suitable for microscopic images with different resolutions and FOVs. Accurate and quick reconstruction of the corresponding high-resolution (HR) phase images from low-resolution (LR) bright-field microscopic intensity images was realized, which were obtained under traditional optical microscopes with different magnifications.
光学定量相位成像(QPI)是一种常用于生物学和生命科学领域的技术,用于恢复具有高对比度的生物细胞,以进行细胞检测和分析。然而,传统的光学显微镜很难直接获得定量相位信息。此外,传统光学显微镜的参数之间存在权衡。通常,较高的分辨率会导致较小的视野(FOV)和较窄的景深(DOF)。为了克服这些缺点,我们提出了一种基于半监督深度学习的混合网络框架,称为 ContransGAN,它可以用于不同放大倍数的传统光学显微镜,以获得高质量的定量相位图像。该网络框架结合了卷积运算和多头自注意力机制,以提高特征提取能力,并且只需要少量未配对的显微镜图像进行训练。ContransGAN 保留了卷积神经网络(CNN)提取局部特征的能力,并借鉴了 Swin-Transformer 网络提取全局特征的能力。根据低功率显微镜获得的振幅图像,训练后的网络可以输出类似于高功率显微镜下恢复的强度传输方程(TIE)的定量相位图像。对生物和非生物样本进行了测试。实验表明,所提出的深度学习算法适用于具有不同分辨率和 FOV 的显微镜图像。从不同放大倍数的传统光学显微镜获得的低分辨率(LR)明场显微镜强度图像中,准确、快速地重建了相应的高分辨率(HR)相位图像。