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一项全基因组基因分析揭示了马铃薯在感染期间增强对青枯病耐受性中的关键作用。

A Genome-Wide Analysis of Genes Reveals the Critical Role in Enhanced Bacterial Wilt Tolerance in Potato During Infection.

作者信息

Tian Tian, Yu Ruimin, Suo Yanyun, Cheng Lixiang, Li Guizhi, Yao Dan, Song Yanjie, Wang Huanjun, Li Xinyu, Gao Gang

机构信息

College of Life Sciences, Shanxi Normal University, Taiyuan, China.

出版信息

Front Genet. 2022 Jul 26;13:894844. doi: 10.3389/fgene.2022.894844. eCollection 2022.

Abstract

is one of the members of TGACG sequence-specific binding protein family, which plays a crucial role in the regulated course of hormone synthesis as a stress-responsive transcription factor (TF). Little is known, however, about its implication in response to bacterial wilt disease in potato () caused by . Here, we performed an identification and analysis of the members of the family based on the whole genome data of potato. In total, 42 were predicted to be distributed on four chromosomes in potato genome. Phylogenetic analysis showed that the proteins of could be divided into six sub-families. We found that many of these genes have more than one exon according to the conserved motif and gene structure analysis. The heat map inferred that are generally expressed in different tissues which are at different stages of development. Genomic collinear analysis showed that there are homologous relationships among potato, tomato, pepper, Arabidopsis, and tobacco genes. Cis-element analysis predicted that there may be many cis-acting elements related to abiotic and biotic stress upstream of promoter including plant hormone response elements. A representative member was selected to investigate the potential function of the genes for further analysis. Quantitative real-time polymerase chain reaction (qRT-PCR) assays indicated that the expression of the was significantly induced by infection and upregulated by exogenous salicylic acid (SA), abscisic acid (ABA), gibberellin 3 (GA), and methyl jasmonate (MeJA). The results of yeast one-hybrid (Y1H) assay showed that regulates BRI1-associated receptor kinase 1 () expression. Thus, our study provides a theoretical basis for further research of the molecular mechanism of the gene of potato tolerance to bacterial wilt.

摘要

是TGACG序列特异性结合蛋白家族的成员之一,作为一种应激响应转录因子(TF),在激素合成的调控过程中发挥着关键作用。然而,关于其在马铃薯()对由引起的青枯病的响应中的作用知之甚少。在这里,我们基于马铃薯的全基因组数据对家族成员进行了鉴定和分析。总共预测有42个分布在马铃薯基因组的四条染色体上。系统发育分析表明,的蛋白质可分为六个亚家族。根据保守基序和基因结构分析,我们发现这些基因中的许多都有不止一个外显子。热图推断,通常在不同发育阶段的不同组织中表达。基因组共线性分析表明,马铃薯、番茄、辣椒、拟南芥和烟草的基因之间存在同源关系。顺式元件分析预测,在启动子上游可能存在许多与非生物和生物胁迫相关的顺式作用元件,包括植物激素响应元件。选择一个代表性成员来研究基因的潜在功能以进行进一步分析。定量实时聚合酶链反应(qRT-PCR)分析表明,的表达受到感染的显著诱导,并被外源水杨酸(SA)、脱落酸(ABA)、赤霉素3(GA)和茉莉酸甲酯(MeJA)上调。酵母单杂交(Y1H)分析结果表明,调控BRI1相关受体激酶1()的表达。因此,我们的研究为进一步研究马铃薯耐青枯病基因的分子机制提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b35/9360622/4c85ae33b849/fgene-13-894844-g001.jpg

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