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一株耐盐且具有石油烃乳化能力的菌株ZY-1的全基因组序列

Complete Genome Sequences of One Salt-Tolerant and Petroleum Hydrocarbon-Emulsifying Strain ZY-1.

作者信息

Su Zhaoying, Yang Shicheng, Li Mingchang, Chen Yu, Wang Shaojing, Yun Yuan, Li Guoqiang, Ma Ting

机构信息

Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China.

出版信息

Front Microbiol. 2022 Jul 28;13:932269. doi: 10.3389/fmicb.2022.932269. eCollection 2022.

Abstract

Salt tolerance is one of the most important problems in the field of environmental governance and restoration. Among the various sources of factors, except temperature, salinity is a key factor that interrupts bacterial growth significantly. In this regard, constant efforts are made for the development of salt-tolerant strains, but few strains with salt tolerance, such as , were found, and there are still few relevant reports about their salt tolerance from complete genomic analysis. Furthermore, with the development of the economy, environmental pollution caused by oil exploitation has attracted much attention, so it is crucial to find the bacteria from which could degrade petroleum hydrocarbon even under high-salt conditions. Herein, one strain named ZY-1 with salt tolerance was isolated by increasing the salinity on LB medium step by step with reservoir water as the bacterial source. Its complete genome was sequenced, which was the first report of the complete genome for species with petroleum hydrocarbon degradation and emulsifying properties. In addition, its genome sequences were compared with the other five strains that are from the same genus level. The results indicated that there really exist some differences among them. In addition, some characteristics were studied. The salt-tolerant strain ZY-1 developed in this study and its emulsification and degradation performance of petroleum hydrocarbons were studied, which is expected to widely broaden the research scope of petroleum hydrocarbon-degrading bacteria in the oil field environment even in the extreme environment. The experiments verified that ZY-1 could significantly grow not only in the salt field but also in the oil field environment. It also demonstrated that the developed salt-tolerant strain can be applied in the petroleum hydrocarbon pollution field for bioremediation. In addition, we expect that the identified variants which occurred specifically in the high-salt strain will enhance the molecular biological understanding and be broadly applied to the biological engineering field.

摘要

耐盐性是环境治理与修复领域最重要的问题之一。在各种影响因素中,除温度外,盐度是显著抑制细菌生长的关键因素。对此,人们不断努力开发耐盐菌株,但发现的耐盐菌株很少,如 ,而且从全基因组分析来看,关于它们耐盐性的相关报道仍然很少。此外,随着经济的发展,石油开采造成的环境污染备受关注,因此找到即使在高盐条件下也能降解石油烃的细菌至关重要。在此,以油藏水为细菌来源,通过在LB培养基上逐步提高盐度,分离出一株耐盐菌株ZY-1。对其全基因组进行了测序,这是关于具有石油烃降解和乳化特性的 物种全基因组的首次报道。此外,将其基因组序列与来自同一属水平的其他五株菌株进行了比较。结果表明它们之间确实存在一些差异。另外,还对一些特性进行了研究。对本研究中开发的耐盐菌株ZY-1及其对石油烃的乳化和降解性能进行了研究,有望在油田环境甚至极端环境中广泛拓宽石油烃降解细菌的研究范围。实验证实ZY-1不仅能在盐田环境中显著生长,也能在油田环境中生长。这也表明所开发的耐盐菌株可应用于石油烃污染领域的生物修复。此外,我们期望在高盐菌株中特异性出现的已鉴定变异体能够增进分子生物学理解,并广泛应用于生物工程领域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00cc/9366552/da44eab1bba4/fmicb-13-932269-g001.jpg

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