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珍稀北龙头(唇形科)的时空监测——单核苷酸多态性基因分型与环境生态位建模及植物标本馆标本

Spatiotemporal monitoring of the rare northern dragonhead (, Lamiaceae) - SNP genotyping and environmental niche modeling herbarium specimens.

作者信息

Nygaard Malene, Kopatz Alexander, Speed James M D, Martin Michael D, Prestø Tommy, Kleven Oddmund, Bendiksby Mika

机构信息

NTNU University Museum Norwegian University of Science and Technology Trondheim Norway.

Natural History Museum and Botanical Garden University of Agder Kristiansand Norway.

出版信息

Ecol Evol. 2022 Aug 12;12(8):e9187. doi: 10.1002/ece3.9187. eCollection 2022 Aug.

Abstract

The species we have studied the spatiotemporal genetic change in the northern dragonhead, a plant species that has experienced a drastic population decline and habitat loss in Europe. We have added a temporal perspective to the monitoring of northern dragonhead in Norway by genotyping herbarium specimens up to 200 years old. We have also assessed whether northern dragonhead has achieved its potential distribution in Norway. To obtain the genotype data from 130 herbarium specimens collected from 1820 to 2008, mainly from Norway (83) but also beyond (47), we applied a microfluidic array consisting of 96 SNP markers. To assess temporal genetic change, we compared our new genotype data with existing data from modern samples. We used sample metadata and observational records to model the species' environmental niche and potential distribution in Norway. Our results show that the SNP array successfully genotyped all included herbarium specimens. Hence, with the appropriate design procedures, the SNP array technology appears highly promising for genotyping old herbarium specimens. The captured genetic diversity correlates negatively with distance from Norway. The historical-modern comparisons reveal similar genetic structure and diversity across space and limited genetic change through time in Norway, providing no signs of any regional bottleneck (i.e., spatiotemporal stasis). The regional areas in Norway have remained genetically divergent, however, both from each other and more so from populations outside of Norway, rendering continued protection of the species in Norway relevant. The ENM results suggest that northern dragonhead has not fully achieved its potential distribution in Norway and corroborate that the species is anchored in warmer and drier habitats.

摘要

我们研究了龙头草的时空遗传变化,这是一种在欧洲经历了种群数量急剧下降和栖息地丧失的植物物种。我们通过对已有200年历史的植物标本进行基因分型,为挪威龙头草的监测增加了一个时间维度。我们还评估了龙头草在挪威是否已达到其潜在分布范围。为了从1820年至2008年收集的130份植物标本中获取基因型数据,这些标本主要来自挪威(83份),也有部分来自其他地区(47份),我们应用了一种由96个单核苷酸多态性(SNP)标记组成的微流控芯片。为了评估时间上的遗传变化,我们将新的基因型数据与现代样本的现有数据进行了比较。我们使用样本元数据和观测记录来模拟该物种在挪威的环境生态位和潜在分布。我们的结果表明,SNP芯片成功地对所有纳入的植物标本进行了基因分型。因此,通过适当的设计程序,SNP芯片技术在对古老植物标本进行基因分型方面似乎非常有前景。捕获的遗传多样性与距挪威的距离呈负相关。历史-现代比较揭示了挪威各地在空间上具有相似的遗传结构和多样性,且随着时间推移遗传变化有限,没有任何区域瓶颈的迹象(即时空稳定)。然而,挪威的不同区域在遗传上仍然存在差异,彼此之间以及与挪威以外的种群相比差异更大,这使得在挪威继续保护该物种具有重要意义。生态位模型(ENM)结果表明,龙头草在挪威尚未完全实现其潜在分布,并证实该物种主要分布在温暖干燥的栖息地。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5737/9374565/4466d0a8d9d4/ECE3-12-e9187-g006.jpg

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