Swiss Federal Research Institute WSL, 8903 Birmensdorf, Switzerland.
Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA.
Philos Trans R Soc Lond B Biol Sci. 2018 Nov 19;374(1763):20170392. doi: 10.1098/rstb.2017.0392.
For several hundred years, millions of fungal sporocarps have been collected and deposited in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale digitization programs, metadata associated with the records are now becoming publicly available, including information on taxonomy, sampling location, collection date and habitat/substrate information. This metadata, as well as data extracted from the physical fungarium specimens themselves, such as DNA sequences and biochemical characteristics, provide a rich source of information not only for taxonomy but also for other lines of biological inquiry. Here, we highlight and discuss how this information can be used to investigate emerging topics in fungal global change biology and beyond. Fungarium data are a prime source of knowledge on fungal distributions and richness patterns, and for assessing red-listed and invasive species. Information on collection dates has been used to investigate shifts in fungal distributions as well as phenology of sporocarp emergence in response to climate change. In addition to providing material for taxonomy and systematics, DNA sequences derived from the physical specimens provide information about fungal demography, dispersal patterns, and are emerging as a source of genomic data. As DNA analysis technologies develop further, the importance of fungarium specimens as easily accessible sources of information will likely continue to grow.This article is part of the theme issue 'Biological collections for understanding biodiversity in the Anthropocene'.
数百年来,数以百万计的真菌子实体被收集并保存在世界各地的收藏馆(真菌馆)中,以支持真菌分类学。由于大规模的数字化计划,现在记录的元数据变得公开可用,包括有关分类学、采样地点、采集日期和栖息地/基质信息的信息。这些元数据以及从真菌标本本身提取的数据,如 DNA 序列和生化特征,不仅为分类学,也为其他生物学研究领域提供了丰富的信息来源。在这里,我们强调并讨论了如何利用这些信息来研究真菌全球变化生物学及其他领域的新出现的主题。真菌馆数据是了解真菌分布和丰富度模式的主要来源,也是评估红色名录和入侵物种的主要来源。关于采集日期的信息已被用于调查真菌分布的变化以及孢子体出现的物候对气候变化的反应。除了为分类学和系统学提供材料外,从实体标本中提取的 DNA 序列还提供了有关真菌种群动态、扩散模式的信息,并且正在成为基因组数据的来源。随着 DNA 分析技术的进一步发展,真菌标本作为易于获取信息的来源的重要性可能会继续增加。本文是主题为“人类世的生物多样性研究的生物收藏”的一部分。