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结直肠腺癌中 的生物信息学分析及其作为潜在诊断生物标志物、治疗靶点和促进免疫细胞浸润的作用。

Bioinformatics Analysis of in Colon Adenocarcinoma as Potential Diagnostic Biomarker, Therapeutic Target and Promoting Immune Cell Infiltration.

机构信息

Department of Gastroenterology, the First Affiliated Hospital, College of Clinical Medicine of Henan University of Science and Technology, Luoyang 471003, China.

Department of Orthopedic, the First Affiliated Hospital, College of Clinical Medicine of Henan University of Science and Technology, Luoyang 471003, China.

出版信息

Biomolecules. 2022 Aug 6;12(8):1081. doi: 10.3390/biom12081081.

Abstract

Colon adenocarcinoma is one of the tumors with the highest mortality rate, and tumorigenesis or development of colon adenocarcinoma is the major reason leading to patient death. However, the molecular mechanism and biomarker to predict tumor progression are currently unclear. With the goal of understanding the molecular mechanism and tumor progression, we utilized the TCGA database to identify differentially expressed genes. After identifying the differentially expressed genes among colon adenocarcinoma tissues with different expression levels of and normal tissue, protein-protein interaction, gene ontology, pathway enrichment, gene set enrichment analysis, and immune cell infiltration analysis were conducted. Here, the top 10 hub genes, i.e., , , , , , , , , , and , were identified, and relative correlation analysis was conducted. Kaplan-Meier analysis revealed that higher expression of correlates with overall survival of colon adenocarcinoma patients, although expression levels of in normal tissues are higher than in tumor tissues. Further functional analysis demonstrated that higher expression of in colon adenocarcinoma may be linked to up-regulate metabolism-related pathways, for example, the cholesterol biosynthesis pathway. These results were confirmed by gene set enrichment analysis. Immune cell infiltration analysis clearly showed that the infiltration percentage of T cells was significantly higher than other immune cells, and TIMER analysis revealed a positive correlation between T-cell infiltration and expression. Finally, COAD cancer cells, Caco-2, were employed to be incubated with squalene and 25-hydroxycholesterol-3-sulfate, and relative experimental results confirmed that the cholesterol biosynthesis pathway involved in modulating the proliferation of COAD tumorigenesis. Our investigation revealed that can be an emerging diagnostic and prognostic biomarker for colon adenocarcinoma by affecting metabolism-related pathways.

摘要

结肠腺癌是死亡率最高的肿瘤之一,而结肠腺癌的发生或发展是导致患者死亡的主要原因。然而,目前尚不清楚肿瘤进展的分子机制和生物标志物。为了了解分子机制和肿瘤进展,我们利用 TCGA 数据库来识别差异表达基因。在鉴定出 和正常组织中 表达水平不同的结肠腺癌组织中的差异表达基因后,进行了蛋白质-蛋白质相互作用、基因本体、通路富集、基因集富集分析和免疫细胞浸润分析。在这里,确定了前 10 个枢纽基因,即、、、、、、、、和,进行了相对相关性分析。Kaplan-Meier 分析表明, 表达水平较高与结肠腺癌患者的总生存率相关,尽管正常组织中的 表达水平高于肿瘤组织。进一步的功能分析表明,结肠腺癌中 表达水平较高可能与上调代谢相关途径有关,例如胆固醇生物合成途径。基因集富集分析证实了这些结果。免疫细胞浸润分析清楚地表明 T 细胞的浸润百分比明显高于其他免疫细胞,TIMER 分析显示 T 细胞浸润与 表达之间存在正相关。最后,用角鲨烯和 25-羟胆固醇-3-硫酸盐孵育 COAD 癌细胞和 Caco-2,相对实验结果证实了胆固醇生物合成途径参与调节 COAD 肿瘤发生的增殖。我们的研究表明, 通过影响代谢相关途径, 可以成为结肠腺癌的一种新的诊断和预后生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb16/9406187/c253ee19ba77/biomolecules-12-01081-g001.jpg

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