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脑癌和神经退行性疾病的当前人类全基因组代谢模型综述。

Review of Current Human Genome-Scale Metabolic Models for Brain Cancer and Neurodegenerative Diseases.

机构信息

Department of Life Sciences and Medicine, University of Luxembourg, L-4367 Belvaux, Luxembourg.

Luxembourg Center of Neuropathology, L-3555 Dudelange, Luxembourg.

出版信息

Cells. 2022 Aug 10;11(16):2486. doi: 10.3390/cells11162486.

Abstract

Brain disorders represent 32% of the global disease burden, with 169 million Europeans affected. Constraint-based metabolic modelling and other approaches have been applied to predict new treatments for these and other diseases. Many recent studies focused on enhancing, among others, drug predictions by generating generic metabolic models of brain cells and on the contextualisation of the genome-scale metabolic models with expression data. Experimental flux rates were primarily used to constrain or validate the model inputs. Bi-cellular models were reconstructed to study the interaction between different cell types. This review highlights the evolution of genome-scale models for neurodegenerative diseases and glioma. We discuss the advantages and drawbacks of each approach and propose improvements, such as building bi-cellular models, tailoring the biomass formulations for glioma and refinement of the cerebrospinal fluid composition.

摘要

脑疾病占全球疾病负担的 32%,影响了 1.69 亿欧洲人。基于约束的代谢建模和其他方法已被应用于预测这些疾病和其他疾病的新治疗方法。许多最近的研究集中于通过生成脑细胞的通用代谢模型以及用表达数据对基因组尺度代谢模型进行上下文化,来增强药物预测等方面。实验通量率主要用于约束或验证模型输入。构建双细胞模型以研究不同细胞类型之间的相互作用。这篇综述强调了用于神经退行性疾病和神经胶质瘤的基因组规模模型的发展。我们讨论了每种方法的优缺点,并提出了改进措施,例如构建双细胞模型、为神经胶质瘤定制生物质配方以及改进脑脊液成分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ab4/9406599/dd4727486015/cells-11-02486-g001.jpg

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