Department of Gynecology, Shanghai First Maternity and Infant Hospital, School of Medicine, Tongji University, Shanghai 200092, China.
Genes (Basel). 2022 Jul 28;13(8):1352. doi: 10.3390/genes13081352.
Objective: Endometriosis is a benign gynecological disease characterized by distant metastasis. Previous studies have discovered abnormal numbers and function of immune cells in endometriotic lesions. We aimed to find potential biomarkers of endometriosis and to explore the relationship between ASPN and the immune microenvironment of endometriosis. Methods: We obtained the GSE141549 and GSE7305 datasets containing endometriosis and normal endometrial samples from the Gene Expression Omnibus database (GEO). In the GSE141549 dataset, differentially expressed genes (DEGs) were found. The Least Absolute Shrinkage and Selection Operator (Lasso) regression and generalized linear models (GLMs) were used to screen new biomarkers. The expression levels and diagnostic utility of biomarkers were assessed in GSE7305, and biomarker expression levels were further validated using qRT-PCR and western blot. We identified DEGs between high and low expression groups of key biomarkers. Enrichment analysis was carried out to discover the target gene’s biological function. We analyzed the relationship between key biomarker expression and patient clinical features. Finally, the immune cells that infiltrate endometriosis were assessed using the Microenvironment Cell Population-Counter (MCP-counter), and the correlation of biomarker expression with immune cell infiltration and immune checkpoints genes was studied. Results: There were a total of 38 DEGs discovered. Two machine learning techniques were used to identify 10 genes. Six biomarkers (SCG2, ASPN, SLIT2, GEM, EGR1, and FOS) had good diagnostic efficiency (AUC > 0.7) by internal and external validation. We excluded previously reported related genes (SLIT2, EGR1, and FOS). ASPN was the most significantly differentially expressed biomarker between normal and ectopic endometrial tissues, as verified by qPCR. The western blot assay revealed a significant upregulation of ASPN expression in endometriotic tissues. The investigation for DEGs in the ASPN high- and low-expression groups revealed that the DEGs were particularly enriched in extracellular matrix tissue, vascular smooth muscle contraction, cytokine interactions, the calcium signaling pathway, and the chemokine signaling pathway. High ASPN expression was related to r-AFS stage (p = 0.006), age (p = 0.03), and lesion location (p < 0.001). Univariate and multivariate logistic regression analysis showed that ASPN expression was an independent influencing factor in patients with endometriosis. Immune cell infiltration analysis revealed a significant increase in T-cell, B-cell, and fibroblast infiltration in endometriosis lesions; cytotoxic lymphocyte, NK-cell, and endothelial cell infiltration were reduced. Additionally, the percentage of T cells, B cells, fibroblasts, and endothelial cells was favorably connected with ASPN expression, while the percentage of cytotoxic lymphocytes and NK cells was negatively correlated. Immune checkpoint gene (CTLA4, LAG3, CD27, CD40, and ICOS) expression and ASPN expression were positively associated. Conclusions: Increased expression of ASPN is associated with immune infiltration in endometriosis, and ASPN can be used as a diagnostic biomarker as well as a potential immunotherapeutic target in endometriosis.
子宫内膜异位症是一种以远处转移为特征的良性妇科疾病。既往研究发现子宫内膜异位症病灶中免疫细胞的数量和功能存在异常。我们旨在寻找子宫内膜异位症的潜在生物标志物,并探讨 ASPN 与子宫内膜异位症免疫微环境的关系。
我们从基因表达综合数据库(GEO)中获取包含子宫内膜异位症和正常子宫内膜样本的 GSE141549 和 GSE7305 数据集。在 GSE141549 数据集中,发现差异表达基因(DEGs)。使用最小绝对收缩和选择算子(Lasso)回归和广义线性模型(GLMs)筛选新的生物标志物。在 GSE7305 中评估生物标志物的表达水平和诊断效用,并使用 qRT-PCR 和 Western blot 进一步验证生物标志物的表达水平。我们鉴定了高和低表达关键生物标志物组之间的差异表达基因。进行富集分析以发现靶基因的生物学功能。我们分析了关键生物标志物表达与患者临床特征之间的关系。最后,使用微环境细胞群体计数器(MCP-counter)评估浸润子宫内膜异位症的免疫细胞,并研究生物标志物表达与免疫细胞浸润和免疫检查点基因的相关性。
共发现 38 个 DEGs。两种机器学习技术用于鉴定 10 个基因。通过内部和外部验证,有 6 个生物标志物(SCG2、ASPN、SLIT2、GEM、EGR1 和 FOS)具有良好的诊断效率(AUC>0.7)。我们排除了先前报道的相关基因(SLIT2、EGR1 和 FOS)。ASPN 是正常和异位子宫内膜组织之间差异表达最显著的生物标志物,这一点通过 qPCR 得到了验证。Western blot 检测显示 ASPN 在子宫内膜异位组织中的表达显著上调。对 ASPN 高表达和低表达组的差异表达基因进行研究,发现差异表达基因特别富集在细胞外基质组织、血管平滑肌收缩、细胞因子相互作用、钙信号通路和趋化因子信号通路中。高 ASPN 表达与 r-AFS 分期(p=0.006)、年龄(p=0.03)和病变位置(p<0.001)相关。单因素和多因素 logistic 回归分析显示,ASPN 表达是子宫内膜异位症患者的独立影响因素。免疫细胞浸润分析显示,子宫内膜异位症病灶中 T 细胞、B 细胞和成纤维细胞浸润显著增加;细胞毒性淋巴细胞、NK 细胞和内皮细胞浸润减少。此外,T 细胞、B 细胞、成纤维细胞和内皮细胞的比例与 ASPN 表达呈正相关,而细胞毒性淋巴细胞和 NK 细胞的比例与 ASPN 表达呈负相关。免疫检查点基因(CTLA4、LAG3、CD27、CD40 和 ICOS)表达与 ASPN 表达呈正相关。
ASPN 的表达增加与子宫内膜异位症的免疫浸润有关,ASPN 可作为子宫内膜异位症的诊断生物标志物和潜在的免疫治疗靶点。