Recombinant DNA and Recombinant Protein Research Center (REDPROM), Aydın Adnan Menderes University, Turkey.
Recombinant DNA and Recombinant Protein Research Center (REDPROM), Aydın Adnan Menderes University, Turkey; Medicine Faculty, Department of Medical Microbiology, Aydın Adnan Menderes University, Turkey.
Virus Res. 2022 Nov;321:198902. doi: 10.1016/j.virusres.2022.198902. Epub 2022 Sep 5.
B. thermosphacta is a psychrotrophic bacterium that often forms the predominant part of the spoilage microflora of aerobically and anaerobically stored meats. Bacteriophages are natural enemies of bacteria and their potential for use in environmentally friendly biocontrol of specific pathogens in food is being intensively studied. In this study, we reported the isolation and characterization of the newly isolated lytic Brochothrix phage ADU4, which is capable of infecting the B. thermosphacta bacterium. For the characterization of Brochothrix phage ADU4; host range, multiplicity of infection values (MOI), phage growth parameters (latent period and burst size), stability at various temperatures and pH, reduction growth of bacteria, effect on biofilm, and molecular characterization were investigated. The spot-test analysis showed positivity with B. thermosphacta strains, while no infection was observed in any other species and genera of bacteria tested. The optimal MOI value of the phage was determined as 0.1. The phage latent period and burst sizes were 40-50 min and 311 PFU/ml per infected host cell, respectively by one-step growth curve analysis. Brochothrix phage ADU4 reduced bacteria immediately after infection, which is shown by optical density (OD) measurement and colony counting (<10 CFU/ml) for 3 days. The degradation of B. thermosphacta in biofilm by Brochothrix phage ADU4 was analyzed and it was found that high titer phage breakdown the existing biofilm and also persistently inhibited biofilm formation. Brochothrix phage ADU4 genome was found to be 127,819 bp, and GC content 41.65%. The genome contains 217 putative open reading frames (ORFs), 4 tRNAs, and additionally, no known virulence and antibiotic resistance genes (AMR) were identified. Brochothrix phage ADU4 showed a high identity (96.09%) to the A9 phage that belongs to the Herelleviridae family. Nevertheless, the assembly module and its around appeared less conserved, and some DNA fragments in Brochothrix phage ADU4 genome were not found in A9 genome and vice versa. A9 contains TnpB, a transposase accessory protein involved in lysogenicity which is absent in Brochothrix phage ADU4. In contrary Brochothrix phage ADU4 had auxiliary metabolic genes (AMG) mostly carried by lytic phages. All these results showed that the Brochothrix phage ADU4 has excellent properties such as strong antibacterial activity, short latent period, high burst size, stability in different conditions, inhibition of biofilms, and absence of virulence and AMR genes. Based on all these features, this newly isolated phage is promising to control B. thermosphacta contamination in meat and meat products, and has the potential to be used alone or in combination with phage cocktails.
B. thermosphacta 是一种嗜冷菌,通常是需氧和厌氧储存肉中腐败微生物区系的主要部分。噬菌体是细菌的天敌,它们在环境友好型生物控制食品中特定病原体方面的潜在用途正在被深入研究。在这项研究中,我们报道了新分离的溶菌性布氏杆菌噬菌体 ADU4 的分离和特性,该噬菌体能够感染 B. thermosphacta 细菌。为了对布氏杆菌噬菌体 ADU4 进行表征;研究了宿主范围、感染复数 (MOI) 值、噬菌体生长参数(潜伏期和爆发大小)、在不同温度和 pH 值下的稳定性、细菌的减少生长、对生物膜的影响以及分子特征。点测试分析显示与 B. thermosphacta 菌株呈阳性,而在测试的任何其他细菌种属中均未观察到感染。噬菌体的最佳 MOI 值确定为 0.1。通过一步生长曲线分析,噬菌体的潜伏期和爆发大小分别为 40-50 分钟和每感染宿主细胞 311 PFU/ml。布氏杆菌噬菌体 ADU4 在感染后立即减少细菌,这可以通过光密度 (OD) 测量和菌落计数 (<10 CFU/ml) 来证明,持续 3 天。通过分析布氏杆菌噬菌体 ADU4 对生物膜中 B. thermosphacta 的降解作用,发现高滴度噬菌体破坏了现有的生物膜,并持续抑制生物膜形成。布氏杆菌噬菌体 ADU4 基因组大小为 127819 bp,GC 含量为 41.65%。基因组包含 217 个推定的开放阅读框 (ORF)、4 个 tRNA,此外,未鉴定出已知的毒力和抗生素耐药基因 (AMR)。布氏杆菌噬菌体 ADU4 与属于 Herelleviridae 家族的 A9 噬菌体具有 96.09%的高同源性。然而,组装模块及其周围的序列不太保守,布氏杆菌噬菌体 ADU4 基因组中的一些 DNA 片段在 A9 基因组中没有发现,反之亦然。A9 含有 TnpB,这是一种参与溶原性的转座酶辅助蛋白,在布氏杆菌噬菌体 ADU4 中不存在。相反,布氏杆菌噬菌体 ADU4 具有辅助代谢基因 (AMG),主要由裂解噬菌体携带。所有这些结果表明,布氏杆菌噬菌体 ADU4 具有很强的抗菌活性、潜伏期短、爆发量大、在不同条件下稳定、抑制生物膜形成以及不存在毒力和 AMR 基因等优良特性。基于所有这些特征,这种新分离的噬菌体有望控制肉和肉类产品中 B. thermosphacta 的污染,并有可能单独使用或与噬菌体鸡尾酒联合使用。