Pedersen Julie Stenberg, Carstens Alexander Byth, Djurhuus Amaru Miranda, Kot Witold, Neve Horst, Hansen Lars Hestbjerg
Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Frederiksberg, Denmark.
Department of Microbiology and Biotechnology, Max Rubner-Institut, Kiel, Germany.
Phage (New Rochelle). 2020 Dec 1;1(4):237-244. doi: 10.1089/phage.2020.0037. Epub 2020 Dec 16.
Soft rot includes the genera and , which are important plant pathogens being responsible for diseases in a wide range of plant species, with potatoes as the main group. Both genera cause pre- and postharvest losses of potatoes, resulting in huge economic losses linked with the soft rot diseases. Organic waste was used to isolate phages, with subsp. DSM 30170 as host. Complete genome sequencing, comparative genomics, and electron microscopy were used to characterize the phage. An adsorption assay was used to estimate adsorption rate. Twenty-three strains from the genera and were used to examine the host range of the phage. Pectobacterium phage Jarilo represents a novel genus of bacteriophages within the family order . Jarilo possesses a double-stranded DNA genome of 40557 bp with a G+C% content of 50.08% and 50 predicted open reading frames. Gene synteny and products seem to be partly conserved between Pectobacterium phage Jarilo and Enterobacteria phage T7, but limited nucleotide similarity is found between Jarilo and other phages within the family The adsorption rate of phage Jarilo increased continuously for 1 h upon infection. Phage Jarilo was not able to infect any strains of and tested with the exception of the strain used for isolation. However, phage Jarilo infected 10 of 16 strains tested. We propose Pectobacterium phage Jarilo as the first member of a new genus of bacteriophages within the family order displaying a broad host range within the genera of
软腐病包括果胶杆菌属和欧文氏菌属,它们是重要的植物病原体,可导致多种植物发病,其中马铃薯是主要受害群体。这两个属都会导致马铃薯采前和采后损失,造成与软腐病相关的巨大经济损失。利用有机废物分离噬菌体,以胡萝卜软腐果胶杆菌亚种DSM 30170作为宿主。采用全基因组测序、比较基因组学和电子显微镜对该噬菌体进行表征。通过吸附试验估算吸附率。使用来自果胶杆菌属和欧文氏菌属的23个菌株检测该噬菌体的宿主范围。果胶杆菌噬菌体贾里洛代表了长尾噬菌体科长尾噬菌体属中的一个新型噬菌体属。贾里洛拥有一个40557 bp的双链DNA基因组,G+C含量为50.08%,预测有50个开放阅读框。果胶杆菌噬菌体贾里洛和肠道杆菌噬菌体T7之间的基因共线性和产物似乎部分保守,但在贾里洛与长尾噬菌体科内的其他噬菌体之间发现的核苷酸相似性有限。噬菌体贾里洛感染后1小时内吸附率持续增加。除用于分离的胡萝卜软腐果胶杆菌菌株外,噬菌体贾里洛无法感染任何测试的果胶杆菌属和欧文氏菌属菌株。然而,噬菌体贾里洛感染了16个测试的欧文氏菌属菌株中的10个。我们提出将果胶杆菌噬菌体贾里洛作为长尾噬菌体科长尾噬菌体属一个新噬菌体属的首个成员,该噬菌体在果胶杆菌属和欧文氏菌属内显示出广泛的宿主范围