Jørgensen Jacob B, Djurhuus Amaru M, Carstens Alexander B, Kot Witold, Neve Horst, Morris Cindy E, Hansen Lars H
Department of Plant and Environmental Science, University of Copenhagen, Frederiksberg, Denmark.
Department of Microbiology and Biotechnology, Max Rubner-Institut, Kiel, Germany.
Phage (New Rochelle). 2020 Dec 1;1(4):245-250. doi: 10.1089/phage.2020.0040. Epub 2020 Dec 16.
are ubiquitous epiphytic plant pathogens infecting a wide range of important agricultural plant species. Bacteriophages has been proposed as biocontrol agents against plant pathogens, however, in order to utilize this approach, a deeper understanding of phage diversity and phage-host interactions is required. Phages targeting GAW0113 were isolated from organic waste samples. Three distinct phage isolates were purified and subjected to whole-genome sequencing, comparative genomics, transmission electron microscopy and host-range assay using a wide selection of diverse isolates. The three phage isolates, Pseudomonas phage Bertil, Misse, and Strit, were shown to have podovirus morphology with a short tail stub and isometric head. They had double-stranded DNA ranging from 41,342 to 41,374 bp in size comprising 50-51 open reading frames. The three phage genomes were highly similar and genomic comparison analyses showed that they all belong to the family of the order . All three phages were shown to have a narrow host-range. The three phages were shown to share morphological and genomic features with other phages in the family, however, based on the limited nucleotide similarity we propose that the phages constitute a novel genus. All three phages were found to infect multiple strains of covering several phylogroups.
是普遍存在的附生植物病原体,可感染多种重要的农业植物物种。噬菌体已被提议作为对抗植物病原体的生物防治剂,然而,为了利用这种方法,需要更深入地了解噬菌体多样性和噬菌体 - 宿主相互作用。从有机废物样本中分离出靶向GAW0113的噬菌体。纯化了三种不同的噬菌体分离株,并对其进行全基因组测序、比较基因组学、透射电子显微镜检查以及使用多种不同分离株进行宿主范围测定。三种噬菌体分离株,即假单胞菌噬菌体Bertil、Misse和Strit,显示具有短尾 stub 和等轴头的短尾噬菌体形态。它们的双链DNA大小在41,342至41,374 bp之间,包含50 - 51个开放阅读框。这三个噬菌体基因组高度相似,基因组比较分析表明它们都属于该目的家族。所有三种噬菌体都显示出宿主范围狭窄。这三种噬菌体与该家族中的其他噬菌体具有共同的形态和基因组特征,然而,基于有限的核苷酸相似性,我们提议这些噬菌体构成一个新属。发现所有三种噬菌体都能感染涵盖多个系统发育组的多种菌株。