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霍乱菌属分支的一个新成员,新种。

sp. nov., a novel member of the Cholerae clade.

作者信息

Islam Mohammad Tarequl, Liang Kevin, Orata Fabini D, Im Monica S, Alam Munirul, Lee Christine C, Boucher Yann F

机构信息

Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.

Infectious Diseases Division, International Centre for Diarrheal Disease Research, Bangladesh (ICDDR, B), Dhaka, Bangladesh.

出版信息

Int J Syst Evol Microbiol. 2022 Sep;72(9). doi: 10.1099/ijsem.0.005571.

Abstract

A number of bacteria with close resemblance to have been isolated over the years by the Centres for Disease Control and Prevention (CDC), which could not be assigned a proper taxonomic designation on the basis of the results from preliminary identification methods. Nine such isolates have been found to share 16S rRNA gene identity exceeding 99 % with yet DNA-DNA hybridization (60.4-62.1 %) and average nucleotide identity values (94.4-95.1 %) were below the species cut-off, indicating a potentially novel species. Phylogenetic analysis of core genomes places this group of isolates in a monophyletic clade, within the 'Cholerae clade', but distinct from any other species. Extensive phenotypic characterization reveals unique biochemical properties that distinguish this novel species from . Comparative genomic analysis reveals a unique set of siderophore genes, indicating that iron acquisition strategies could be vital for the divergence of the novel species from a common ancestor with . On the basis of the genetic, phylogenetic and phenotypic differences observed, we propose that these isolates represent a novel species of the genus , for which the name sp. nov. is proposed. Strain 2521-89 (= DSM 112461=CCUG 75318), isolated from lake water, is the type strain.

摘要

多年来,美国疾病控制与预防中心(CDC)分离出了许多与[具体物种]极为相似的细菌,基于初步鉴定方法的结果,这些细菌无法被赋予恰当的分类名称。已发现9株此类分离株与[具体物种]的16S rRNA基因同一性超过99%,但DNA-DNA杂交(60.4 - 62.1%)和平均核苷酸同一性值(94.4 - 95.1%)低于物种界定标准,表明这可能是一个新物种。核心基因组的系统发育分析将这组分离株置于“霍乱弧菌进化枝”内的一个单系分支中,但与任何其他物种都不同。广泛的表型特征分析揭示了将这个新物种与[具体物种]区分开来的独特生化特性。比较基因组分析揭示了一组独特的铁载体基因,表明铁获取策略可能对该新物种与[具体物种]的共同祖先分化至关重要。基于所观察到的遗传、系统发育和表型差异,我们提议这些分离株代表[具体属]的一个新物种,为此提议命名为[具体名称] sp. nov.。从湖水中分离出的菌株2521 - 89(= DSM 112461 = CCUG 75318)为模式菌株。

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