Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, 117997, Russia.
Institute of Physiology of Komi Science Centre of the Ural Branch of the Russian Academy of Sciences, FRC Komi SC UB RAS, Syktyvkar, 167982, Russia.
Biochemistry (Mosc). 2022 Sep;87(9):890-902. doi: 10.1134/S0006297922090036.
The specificity of the most plant carbohydrate-binding proteins (CBP), many of which are known only through bioinformatic analysis of the genome, has either not been studied at all or characterized to a limited extent. The task of deciphering the carbohydrate specificity of the proteins can be solved using glycoarrays composed of many tens or even hundreds of glycans immobilized on a glass surface. Plant carbohydrates are the most significant natural ligands for plant proteins; this work shows that plant polysaccharides without additional modification can be immobilized on the surface, bearing N-hydroxysuccinimide activated carboxyl groups. As a result, an array of 113 well-characterized polysaccharides isolated from various plant cell walls, 23 mono- and oligosaccharides - components of polysaccharides, and glycans - ligands for widely known plant lectins was designed. Upon chemical immobilization of polysaccharides, their functional activity was preserved, which was confirmed by the results of interaction with antibodies and the plant lectin ricin. Using the constructed array, a previously unknown ability of ricin to bind polysaccharides was found, which significantly expands the knowledge of its specificity, and it was also found that a large variety of antibodies to plant polysaccharides are present in human peripheral blood.
大多数植物碳水化合物结合蛋白(CBP)的特异性,其中许多仅通过对基因组的生物信息学分析才为人所知,要么根本没有研究过,要么只是在有限的程度上进行了表征。通过使用由固定在玻璃表面上的数十甚至数百种糖制成的糖芯片,可以解决破译蛋白质碳水化合物特异性的任务。植物碳水化合物是植物蛋白最重要的天然配体;这项工作表明,未经额外修饰的植物多糖可以固定在表面上,带有 N-羟基琥珀酰亚胺活化的羧基。结果,设计了 113 种来自各种植物细胞壁的经过充分表征的多糖、23 种单糖和寡糖——多糖的组成部分,以及糖——广泛存在的植物凝集素的配体。多糖经过化学固定后,其功能活性得以保留,这一点通过与抗体和植物凝集素蓖麻毒素的相互作用结果得到了证实。使用构建的阵列,发现蓖麻毒素以前未知的结合多糖的能力,这大大扩展了其特异性的知识,还发现了大量存在于人外周血中的针对植物多糖的抗体。