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神经退行性疾病组学研究的网络方法

Network approaches for omics studies of neurodegenerative diseases.

作者信息

Zhao Na, Quicksall Zachary, Asmann Yan W, Ren Yingxue

机构信息

Department of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.

Department of Quantitative Health Sciences, Mayo Clinic, Jacksonville, FL, United States.

出版信息

Front Genet. 2022 Sep 16;13:984338. doi: 10.3389/fgene.2022.984338. eCollection 2022.

DOI:10.3389/fgene.2022.984338
PMID:36186441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9523597/
Abstract

The recent methodological advances in multi-omics approaches, including genomic, transcriptomic, metabolomic, lipidomic, and proteomic, have revolutionized the research field by generating "big data" which greatly enhanced our understanding of the molecular complexity of the brain and disease states. Network approaches have been routinely applied to single-omics data to provide critical insight into disease biology. Furthermore, multi-omics integration has emerged as both a vital need and a new direction to connect the different layers of information underlying disease mechanisms. In this review article, we summarize popular network analytic approaches for single-omics data and multi-omics integration and discuss how these approaches have been utilized in studying neurodegenerative diseases.

摘要

包括基因组学、转录组学、代谢组学、脂质组学和蛋白质组学在内的多组学方法,近年来在方法学上取得了进展,通过生成“大数据”彻底改变了研究领域,极大地增进了我们对大脑分子复杂性和疾病状态的理解。网络方法已常规应用于单组学数据,以提供对疾病生物学的关键见解。此外,多组学整合已成为连接疾病机制背后不同信息层的迫切需求和新方向。在这篇综述文章中,我们总结了用于单组学数据和多组学整合的常用网络分析方法,并讨论了这些方法如何被用于研究神经退行性疾病。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba20/9523597/4dabdbb69fb5/fgene-13-984338-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba20/9523597/4dabdbb69fb5/fgene-13-984338-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba20/9523597/4dabdbb69fb5/fgene-13-984338-g001.jpg

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本文引用的文献

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The Big Picture of Neurodegeneration: A Meta Study to Extract the Essential Evidence on Neurodegenerative Diseases in a Network-Based Approach.神经退行性变全景:一项基于网络方法提取神经退行性疾病关键证据的元研究。
Front Aging Neurosci. 2022 Jun 27;14:866886. doi: 10.3389/fnagi.2022.866886. eCollection 2022.
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Large-scale deep multi-layer analysis of Alzheimer's disease brain reveals strong proteomic disease-related changes not observed at the RNA level.大规模深度多层分析阿尔茨海默病大脑揭示了在 RNA 水平未观察到的强烈蛋白质组疾病相关变化。
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Multi-omic landscaping of human midbrains identifies disease-relevant molecular targets and pathways in advanced-stage Parkinson's disease.
对人类中脑的多组学分析鉴定了晚期帕金森病中的疾病相关分子靶标和途径。
Clin Transl Med. 2022 Jan;12(1):e692. doi: 10.1002/ctm2.692.
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Characterization of Alzheimer's Disease-Associated Excitatory Neurons Single-Cell RNA Sequencing Analysis.阿尔茨海默病相关兴奋性神经元的特征:单细胞RNA测序分析
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ABCA7 Regulates Brain Fatty Acid Metabolism During LPS-Induced Acute Inflammation.ABCA7在脂多糖诱导的急性炎症过程中调节脑脂肪酸代谢。
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Alzheimers Res Ther. 2021 Mar 4;13(1):55. doi: 10.1186/s13195-021-00794-8.
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