菠萝（凤梨）和香蕉（品种）中与软腐病相关物种的基因组序列草图
Draft Genome Sequences of Species Associated with Soft Rot Diseases in Pineapple (Ananas comosus) and Banana ( spp.).
作者信息
Young Anthony J, Birt Henry W G, Vaghefi Niloofar, Hoelzle Robert D, Dennis Paul G
机构信息
School of Agriculture and Food Sciences, The University of Queensland, Gatton, Queensland, Australia.
School of Earth and Environmental Sciences, The University of Queensland, Brisbane, Queensland, Australia.
出版信息
Microbiol Resour Announc. 2022 Nov 17;11(11):e0071622. doi: 10.1128/mra.00716-22. Epub 2022 Oct 5.
Abstract
species cause soft rots on many commercial crops. Here, we present the draft genomes of Dickeya oryzae (BRIP 64262) and Dickeya zeae (BRIP 64263) isolates causing soft rot on banana ( spp.) and pineapple (Ananas comosus) plants, respectively. This expands the range of available genomes from plant-pathogenic species.
摘要
多种病原菌会在许多经济作物上引发软腐病。在此，我们展示了分别导致香蕉（品种）和菠萝（凤梨）植株发生软腐病的稻生果胶杆菌（BRIP 64262）和玉米果胶杆菌（BRIP 64263）分离株的基因组草图。这扩大了植物致病果胶杆菌属可用基因组的范围。
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本文引用的文献
1
sp. nov., isolated from the roots of rice.新种，从水稻根部分离得到。
Int J Syst Evol Microbiol. 2020 Jul;70(7):4171-4178. doi: 10.1099/ijsem.0.004265.
2
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
3
Diversity of Dickeya Strains Collected from Pineapple Plants and Irrigation Water in Hawaii.
Plant Dis. 2014 Jun;98(6):817-824. doi: 10.1094/PDIS-03-13-0219-RE.
4
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.高通量 ANI 分析 9 万余组原核基因组揭示了清晰的物种界限。
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
7
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
8
Draft genome sequences of 17 isolates of the plant pathogenic bacterium dickeya.植物致病细菌迪基氏菌属17个分离株的基因组序列草图
Genome Announc. 2013 Nov 21;1(6):e00978-13. doi: 10.1128/genomeA.00978-13.
9
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J Bacteriol. 2012 Aug;194(16):4452-3. doi: 10.1128/JB.00819-12.
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