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内质网管状网络动力学中环闭模型。

Model for ring closure in ER tubular network dynamics.

机构信息

Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.

Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel.

出版信息

Biophys J. 2023 Jun 6;122(11):1974-1984. doi: 10.1016/j.bpj.2022.10.005. Epub 2022 Oct 5.

DOI:10.1016/j.bpj.2022.10.005
PMID:36203355
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10257015/
Abstract

Tubular networks of the endoplasmic reticulum (ER) are dynamic structures whose steady-state conformations are maintained by a balance between the persistent generation and vanishing of the network elements. While factors producing the ER tubules and intertubular junctions have been investigated, the mechanisms behind their elimination remained unknown. Here, we addressed the ER ring closure, the process resulting in the tubule and junction removal through constriction of the network unit cells into junctional knots followed by the knot remodeling into regular junctions. We considered the ring closure to be driven by the tension existing in ER membranes. We based our consideration on the notion of Gibbs' thermodynamic tension and reviewed its relationship to other tension definitions used in the literature. We modeled, computationally, the structures of the junctional knots containing internal nanopores and analyzed their tension dependence. We analyzed the process of the pore sealing through membrane fission resulting in the formation of regular junctions. Considering the hemi-fission as the rate-limiting stage of the fission reaction, we evaluated the membrane tensions guaranteeing the spontaneous character of the pore sealing. We concluded that feasible membrane tensions explain all stages of the ER ring closure.

摘要

内质网(ER)的管状网络是动态结构,其稳定状态构象通过网络元件的持续产生和消失之间的平衡来维持。虽然已经研究了产生 ER 小管和管间连接的因素,但它们消除的机制仍然未知。在这里,我们研究了 ER 环闭合,即通过网络单元细胞在连接结处收缩,然后将结重塑成规则连接,从而导致小管和连接去除的过程。我们认为环闭合是由 ER 膜中的张力驱动的。我们基于 Gibbs 热力学张力的概念,并回顾了其与文献中使用的其他张力定义的关系。我们通过计算建模了含有内部纳米孔的连接结的结构,并分析了它们的张力依赖性。我们通过膜分裂导致形成规则连接来分析孔密封的过程。考虑到半裂变是裂变反应的限速阶段,我们评估了保证孔密封自发性的膜张力。我们得出结论,可行的膜张力可以解释 ER 环闭合的所有阶段。

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本文引用的文献

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Structural Diversity within the Endoplasmic Reticulum-From the Microscale to the Nanoscale.内质网中的结构多样性。从微观尺度到纳米尺度。
Cold Spring Harb Perspect Biol. 2023 Jun 1;15(6):a041259. doi: 10.1101/cshperspect.a041259.
2
Mechanism of shaping membrane nanostructures of endoplasmic reticulum.内质网膜纳米结构形成机制。
Proc Natl Acad Sci U S A. 2022 Jan 4;119(1). doi: 10.1073/pnas.2116142119.
3
ER-to-Golgi protein delivery through an interwoven, tubular network extending from ER.内质网到高尔基体的蛋白通过从内质网延伸的交织管状网络进行运输。
Cell. 2021 Apr 29;184(9):2412-2429.e16. doi: 10.1016/j.cell.2021.03.035. Epub 2021 Apr 13.
4
Mechanism of membrane-curvature generation by ER-tubule shaping proteins.内质网管腔塑形蛋白生成膜曲率的机制。
Nat Commun. 2021 Jan 25;12(1):568. doi: 10.1038/s41467-020-20625-y.
5
Myomerger promotes fusion pore by elastic coupling between proximal membrane leaflets and hemifusion diaphragm.肌联蛋白通过临近膜小叶和半融合膈膜之间的弹性偶联促进融合孔形成。
Nat Commun. 2021 Jan 21;12(1):495. doi: 10.1038/s41467-020-20804-x.
6
Dynamic constriction and fission of endoplasmic reticulum membranes by reticulon.由 reticulon 介导的内质网膜的动态收缩和裂变。
Nat Commun. 2019 Nov 22;10(1):5327. doi: 10.1038/s41467-019-13327-7.
7
A consistent quadratic curvature-tilt theory for fluid lipid membranes.一种一致的二次曲率倾斜理论用于流体脂质膜。
J Chem Phys. 2019 Oct 28;151(16):164108. doi: 10.1063/1.5119683.
8
Reconstituting the reticular ER network - mechanistic implications and open questions.重建网状内质网网络 - 力学意义和未解决的问题。
J Cell Sci. 2019 Jan 22;132(4):jcs227611. doi: 10.1242/jcs.227611.
9
Dynamic nanoscale morphology of the ER surveyed by STED microscopy.通过受激发射损耗显微镜观察内质网的动态纳米级形态。
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Axonal endoplasmic reticulum is very narrow.轴突内质网很窄。
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