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荨麻科(Urticaceae)完整叶绿体基因组的特征分析

Characterization of the complete chloroplast genome of (Urticaceae).

作者信息

Yang Xuelian, Yan Li, Wang Xia, Wu Yongfei, Hu Xiaojing

机构信息

College of Agriculture, Guizhou University, Guiyang, China.

出版信息

Mitochondrial DNA B Resour. 2022 Sep 27;7(9):1732-1733. doi: 10.1080/23802359.2022.2124823. eCollection 2022.

DOI:10.1080/23802359.2022.2124823
PMID:36213864
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9542265/
Abstract

Benth. 1861 (Urticaceae) is distributed in east and southeast Asian countries, including China, Vietnam, and Japan, and has important applications in construction, medicine, and the food industry. We sequenced the genome using Illumina DNA sequencing technology. The genome was 153,220 bp long. Annotation of the genome showed that it encoded 130 genes, including 85 protein-coding genes, 37 tRNA genes, and eight rRNA genes. In addition, 15 of the genes contained a single intron and two contained two introns. Furthermore, 12 consists of 3 exons that are expected to be trans-spliced together. Subsequent phylogenetic analysis revealed that is closely related to the species (i.e. [MZ292972], [MK227819], and var. [MN189961]).

摘要

本特。1861年(荨麻科)分布于东亚和东南亚国家,包括中国、越南和日本,在建筑、医药和食品工业中有重要应用。我们使用Illumina DNA测序技术对基因组进行了测序。基因组长度为153,220 bp。基因组注释表明它编码130个基因,包括85个蛋白质编码基因、37个tRNA基因和8个rRNA基因。此外,15个基因含有一个内含子,2个基因含有两个内含子。此外,12个由3个外显子组成,预计将一起进行反式剪接。随后的系统发育分析表明, 与 物种密切相关(即 [MZ292972]、 [MK227819]和 变种 [MN189961])。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2068/9542265/b05dc9e03a18/TMDN_A_2124823_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2068/9542265/b05dc9e03a18/TMDN_A_2124823_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2068/9542265/b05dc9e03a18/TMDN_A_2124823_F0001_B.jpg

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本文引用的文献

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Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
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ModelFinder: fast model selection for accurate phylogenetic estimates.ModelFinder:用于准确系统发育估计的快速模型选择
Nat Methods. 2017 Jun;14(6):587-589. doi: 10.1038/nmeth.4285. Epub 2017 May 8.
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PLoS One. 2012;7(2):e30619. doi: 10.1371/journal.pone.0030619. Epub 2012 Feb 1.