Yang Jie, Zhang Yan, Liang Jingqi, Yang Xinquan, Liu Liang, Zhao Hongmou
Department of Foot and Ankle Surgery, Honghui Hospital of Xi'an Jiaotong University, Xi'an , China.
Front Cell Dev Biol. 2022 Sep 26;10:1010114. doi: 10.3389/fcell.2022.1010114. eCollection 2022.
Rheumatoid arthritis (RA) has a high incidence and adverse effects on patients, thus posing a serious threat to people's life and health. However, the underlying mechanisms regarding the development of RA are still elusive. Herein, we aimed to evaluate the RA-associated molecular mechanisms using the scRNA-seq technique. We used the GEO database to obtain scRNA-seq datasets for synovial fibroblasts (SFs) from RA cases, and the genes were then analyzed using principal component analysis (PCA) and T-Stochastic Neighbor Embedding (TSNE) analyses. Bioinformatics evaluations were carried out for asserting the highly enriched signaling pathways linked to the marker genes, and the key genes related to RA initiation were further identified. According to the obtained results, 3 cell types (0, 1, and 2) were identified by TSNE and some marker genes were statistically upregulated in cell type 1 than the other cell types. These marker genes predominantly contributed to extracellular matrix (ECM) architecture, collagen-harboring ECM, and ECM structural components, and identified as enriched with PI3K/AKT signaling cascade. Notably, fibronectin-1 (FN-1) has been identified as a critical gene that is strongly linked to the development of SFs and has enormous promise for regulating the onset of RA. Moreover, such an investigation offers novel perspectives within onset/progression of RA, suggesting that FN-1 may be a key therapeutic target for RA therapies.
类风湿性关节炎(RA)发病率高,对患者有不良影响,因此对人们的生命和健康构成严重威胁。然而,RA发病的潜在机制仍不清楚。在此,我们旨在使用单细胞RNA测序(scRNA-seq)技术评估与RA相关的分子机制。我们利用基因表达综合数据库(GEO)获取RA患者滑膜成纤维细胞(SFs)的scRNA-seq数据集,然后使用主成分分析(PCA)和T-随机邻域嵌入(TSNE)分析对基因进行分析。进行生物信息学评估以确定与标记基因相关的高度富集的信号通路,并进一步鉴定与RA发病相关的关键基因。根据所得结果,通过TSNE鉴定出3种细胞类型(0、1和2),并且一些标记基因在细胞类型1中比其他细胞类型在统计学上上调。这些标记基因主要作用于细胞外基质(ECM)结构、含胶原蛋白的ECM和ECM结构成分,并被确定富含PI3K/AKT信号级联。值得注意的是,纤连蛋白-1(FN-1)已被鉴定为一个关键基因,它与SFs的发育密切相关,并且在调节RA发病方面具有巨大潜力。此外,这样的研究为RA的发病/进展提供了新的视角,表明FN-1可能是RA治疗的关键靶点。