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Identification and validation of ferroptosis-related lncRNA signatures as a novel prognostic model for glioma.

作者信息

Huang Liang, Zhang Juan, Gong Fanghua, Han Yuhua, Huang Xing, Luo Wanxiang, Cai Huaan, Zhang Fan

机构信息

Department of Rehabilitation Medicine, Hunan Provincial People's Hospital, The First Affiliated Hospital of Hunan Normal University, Changsha, Hunan, China.

Department of Nursing, Hunan Provincial People's Hospital, The First Affiliated Hospital of Hunan Normal University, Changsha, Hunan, China.

出版信息

Front Genet. 2022 Sep 20;13:927142. doi: 10.3389/fgene.2022.927142. eCollection 2022.


DOI:10.3389/fgene.2022.927142
PMID:36226186
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9549413/
Abstract

Ferroptosis is a newly discovered form of regulated cell death with distinct properties and recognizing functions involved in physical conditions or various diseases, including cancers. However, the relationship between gliomas and ferroptosis-related lncRNAs (FRLs) remains unclear. We collected a total of 1850 samples from The Cancer Genome Atlas (TCGA) and Genotype Tissue Expression (GTEX) databases, including 698 tumor and 1,152 normal samples. A list of ferroptosis-related genes was downloaded from the Ferrdb website. Differentially expressed FRLs (DEFRLS) were analyzed using the "limma" package in R software. Subsequently, prognosis-related FRLs were obtained by univariate Cox analysis. Finally, a prognostic model based on the 3 FRLs was constructed using Cox regression analysis with the least absolute shrinkage and selection operator (LASSO) algorithm. The prognostic power of the model was assessed using receiver operating characteristic (ROC) curve analysis and Kaplan-Meier (K-M) survival curve analysis. In addition, we further explored the relationship of the immune landscape and somatic mutations to prognostic model characteristics. Finally, we validated the function of LINC01426 . We successfully constructed a 3-FRLs signature and classified glioma patients into high-risk and low-risk groups based on the risk score calculated from this signature. Compared with traditional clinicopathological features [age, sex, grade, isocitrate dehydrogenase (IDH) status], the prognostic accuracy of this model is more stable and stronger. Additionally, the model had stable predictive power for overall survival over a 5-year period. In addition, we found significant differences between the two groups in cellular immunity, the numbers of many immune cells, including NK cells, CD4, CD8 T-cells, and macrophages, and the expression of many immune-related genes. Finally, the two groups were also significantly different at the level of somatic mutations, especially in glioma prognosis-related genes such as IDH1 and ATRX, with lower mutation rates in the high-risk group leading to poorer prognosis. Finally, we found that the ferroptosis process of glioma cells was inhibited after knocking down the expression of LINC01426. The proposed 3-FRL signature is a promising biomarker for predicting prognostic features in glioma patients.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/cc8e101023b9/fgene-13-927142-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/b7a2a49e0420/fgene-13-927142-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/bd58d4f2f299/fgene-13-927142-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/3fdeab078369/fgene-13-927142-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/183a68afd81e/fgene-13-927142-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/f4d481e495a2/fgene-13-927142-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/0cef1ed4ee49/fgene-13-927142-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/d126b70c0145/fgene-13-927142-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/bc6635c4702a/fgene-13-927142-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/cc8e101023b9/fgene-13-927142-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/b7a2a49e0420/fgene-13-927142-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/bd58d4f2f299/fgene-13-927142-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/3fdeab078369/fgene-13-927142-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/183a68afd81e/fgene-13-927142-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/f4d481e495a2/fgene-13-927142-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/0cef1ed4ee49/fgene-13-927142-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/d126b70c0145/fgene-13-927142-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/bc6635c4702a/fgene-13-927142-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/07a2/9549413/cc8e101023b9/fgene-13-927142-g009.jpg

相似文献

[1]
Identification and validation of ferroptosis-related lncRNA signatures as a novel prognostic model for glioma.

Front Genet. 2022-9-20

[2]
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[3]
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[4]
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[5]
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[6]
Construction of a ferroptosis-related signature based on seven lncRNAs for prognosis and immune landscape in clear cell renal cell carcinoma.

BMC Med Genomics. 2022-12-17

[7]
A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma.

Front Cell Dev Biol. 2021-5-19

[8]
A Novel lncRNA Panel Related to Ferroptosis, Tumor Progression, and Microenvironment is a Robust Prognostic Indicator for Glioma Patients.

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[9]
Prognostication of Pancreatic Cancer Using The Cancer Genome Atlas Based Ferroptosis-Related Long Non-Coding RNAs.

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[10]
Analysis of Ferroptosis-Related LncRNAs Signatures Associated with Tumor Immune Infiltration and Experimental Validation in Clear Cell Renal Cell Carcinoma.

Int J Gen Med. 2022-3-19

引用本文的文献

[1]
Ferroptosis-related LncRNAs in diseases.

BMC Biol. 2025-6-6

[2]
Ferroptosis-Related Transcriptional Level Changes and the Role of CIRBP in Glioblastoma Cells Ferroptosis.

Biomedicines. 2024-12-27

[3]
Identification and validation of a ferroptosis-related lncRNA signature to robustly predict the prognosis, immune microenvironment, and immunotherapy efficiency in patients with clear cell renal cell carcinoma.

PeerJ. 2022

本文引用的文献

[1]
Long noncoding RNA LINC01426 promotes the progression of lung adenocarcinoma via regulating miRNA-125a-5p/ casein kinase 2 alpha 1 axis.

Bioengineered. 2022-3

[2]
Identification of Ferroptosis-Related Biomarkers for Prognosis and Immunotherapy in Patients With Glioma.

Front Cell Dev Biol. 2022-1-31

[3]
A Novel lncRNA Panel Related to Ferroptosis, Tumor Progression, and Microenvironment is a Robust Prognostic Indicator for Glioma Patients.

Front Cell Dev Biol. 2021-12-7

[4]
The lncRNA Signatures of Genome Instability to Predict Survival in Patients with Renal Cancer.

J Healthc Eng. 2021

[5]
Identification of N6-methylandenosine related LncRNAs biomarkers associated with the overall survival of osteosarcoma.

BMC Cancer. 2021-12-1

[6]
Imbalanced GSH/ROS and sequential cell death.

J Biochem Mol Toxicol. 2022-1

[7]
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data.

Innovation (Camb). 2021-7-1

[8]
The implications of IDH mutations for cancer development and therapy.

Nat Rev Clin Oncol. 2021-10

[9]
A Prognostic Ferroptosis-Related lncRNAs Signature Associated With Immune Landscape and Radiotherapy Response in Glioma.

Front Cell Dev Biol. 2021-5-19

[10]
Adaptive Changes Allow Targeting of Ferroptosis for Glioma Treatment.

Cell Mol Neurobiol. 2022-10

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