Wolfsberger James Gerard, Hunt Emily C, Bobba Sai Sumedha, Love-Rutledge Sharifa, Vogler Bernhard
Chemistry Department, University of Alabama in Huntsville, 301 Sparkman Drive, Huntsville, Alabama, 35899, USA.
James Clemens High School, 11306 County Line Rd, Madison, Alabama, 35756, USA.
Metabolomics. 2022 Oct 19;18(11):80. doi: 10.1007/s11306-022-01939-y.
Metabolomics is a multi-discipline approach to systems biology that provides a snapshot of the metabolic status of a cell, tissue, or organism. Metabolomics uses mass spectroscopy (MS) and nuclear magnetic resonance (NMR) to analyze biological samples for low molecular weight metabolites.
Normalize urine sample pre-acquisition to perform a targeted quantitative analysis of selected metabolites in rat urine.
Urine samples were provided from rats on a control diet (n = 10) and moderate sucrose diet (n = 8) collected in a metabolic cage during an eight hour fast. Urine from each sample was prepared by two different methods. One sample was a non-normalized sample of 1200 µL and the second sample was a variable volume-normalized to the concentration of urobilin in a standard sample of urine. The urobilin concentration in all samples was determined by fluorescence. Ten metabolites for each non-normalized and normalized urine sample were quantified by integration to an internal standard of DSS.
Both groups showed an improvement in pH range going from non-normalized to normalized samples. In the group on the control diet, eight metabolites had significant improvement in range, while the remaining two metabolites had insignificant improvement in range comparing the non-normalized sample to the normalized sample. In the group on the moderate sucrose diet all ten metabolites showed significant improvement in range going from non-normalized to normalized samples.
These findings describe a pre-acquisition method of urine normalization to adjust for differences in hydration state of each organism. This results in a narrower concentration range in a targeted analysis.
代谢组学是一种用于系统生物学的多学科方法,它能提供细胞、组织或生物体代谢状态的快照。代谢组学使用质谱(MS)和核磁共振(NMR)来分析生物样品中的低分子量代谢物。
对尿液样本采集前进行标准化处理,以对大鼠尿液中选定的代谢物进行靶向定量分析。
从食用对照饮食的大鼠(n = 10)和中等蔗糖饮食的大鼠(n = 8)中获取尿液样本,这些样本是在代谢笼中禁食8小时期间收集的。每个样本的尿液通过两种不同方法制备。一个样本是1200 μL的未标准化样本,第二个样本是根据尿液标准样本中尿胆素浓度进行可变体积标准化的样本。所有样本中的尿胆素浓度通过荧光法测定。通过与DSS内标进行积分,对每个未标准化和标准化尿液样本中的十种代谢物进行定量。
两组从未标准化样本到标准化样本,pH范围均有所改善。在食用对照饮食的组中,与未标准化样本相比,八种代谢物的范围有显著改善,而其余两种代谢物的范围改善不显著。在中等蔗糖饮食的组中,从未标准化样本到标准化样本,所有十种代谢物的范围均有显著改善。
这些发现描述了一种尿液标准化的采集前方法,以调整每个生物体水合状态的差异。这导致在靶向分析中浓度范围更窄。