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血液转录组分析:创伤后应激障碍中的铁死亡和潜在炎症途径

Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder.

作者信息

Zhu Jie, Zhang Ye, Ren Rong, Sanford Larry D, Tang Xiangdong

机构信息

Sleep Medicine Center, Department of Respiratory and Critical Care Medicine, Mental Health Center, West China Hospital, Sichuan University, Chengdu, China.

Sleep Research Laboratory, Center for Integrative Neuroscience and Inflammatory Diseases, Pathology and Anatomy, Eastern Virginia Medical School, Norfolk, VA, United States.

出版信息

Front Psychiatry. 2022 Oct 5;13:841999. doi: 10.3389/fpsyt.2022.841999. eCollection 2022.

Abstract

BACKGROUND

Transcriptome-wide analysis of peripheral blood in post-traumatic stress disorder (PTSD) indicates widespread changes in immune-related pathways and function. Ferroptosis, an iron-dependent regulated cell death, is closely related to oxidative stress. However, little is known as to whether ferroptosis plays a role in PTSD.

METHODS

We conducted a comprehensive analysis of combined data from six independent peripheral blood transcriptional studies in the Gene Expression Omnibus (GEO) database, covering PTSD and control individuals. Differentially expressed genes (DEGs) were extracted by comparing PTSD patients with control individuals, from which 29 ferroptosis-related genes (FRGs) were cross-matched and obtained. The weighted gene co-expression network analysis (WGCNA), the Extreme Gradient Boosting (XGBoost) model with Bayesian Optimization, and the least absolute shrinkage and selection operator (LASSO) Cox regression were utilized to construct a PTSD prediction model. Single-sample Gene Set Enrichment Analysis (ssGSEA) and CIBERSORT revealed the disturbed immunologic state in PTSD high-risk patients.

RESULTS

Three crucial FRGs (ACSL4, ACO1, and GSS) were identified and used to establish a predictive model of PTSD. The receiver operating characteristic (ROC) curve verifies its risk prediction ability. Remarkably, ssGSEA and CIBERSORT demonstrated changes in cellular immunity and antigen presentation depending on the FRGs model.

CONCLUSION

These findings collectively provide evidence that ferroptosis may change immune status in PTSD and be related to the occurrence of PTSD, which may help delineate mechanisms and discover treatment biomarkers for PTSD.

摘要

背景

创伤后应激障碍(PTSD)外周血的全转录组分析表明,免疫相关途径和功能发生了广泛变化。铁死亡是一种铁依赖性调节性细胞死亡,与氧化应激密切相关。然而,关于铁死亡是否在PTSD中起作用知之甚少。

方法

我们对基因表达综合数据库(GEO)中六项独立的外周血转录研究的合并数据进行了全面分析,涵盖了PTSD患者和对照个体。通过比较PTSD患者与对照个体提取差异表达基因(DEG),从中交叉匹配并获得29个铁死亡相关基因(FRG)。利用加权基因共表达网络分析(WGCNA)、贝叶斯优化的极端梯度提升(XGBoost)模型和最小绝对收缩和选择算子(LASSO)Cox回归构建PTSD预测模型。单样本基因集富集分析(ssGSEA)和CIBERSORT揭示了PTSD高危患者免疫状态的紊乱。

结果

鉴定出三个关键的FRG(ACSL4、ACO1和GSS)并用于建立PTSD预测模型。受试者工作特征(ROC)曲线验证了其风险预测能力。值得注意的是,ssGSEA和CIBERSORT证明了基于FRG模型的细胞免疫和抗原呈递的变化。

结论

这些发现共同提供了证据,表明铁死亡可能改变PTSD中的免疫状态并与PTSD的发生有关,这可能有助于阐明机制并发现PTSD的治疗生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f348/9581323/7992b3a11ba2/fpsyt-13-841999-g001.jpg

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