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基因对相关性改变可作为结肠癌潜在诊断标志物。

Alterations in Gene Pair Correlations as Potential Diagnostic Markers for Colon Cancer.

机构信息

Department of Anatomy, Physiology and Pharmacology, College of Medicine, University of Saskatchewan, 107 Wiggins Road, Saskatoon, SK S7N 5E5, Canada.

Drug Discovery and Development Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, SK S7N 5E5, Canada.

出版信息

Int J Mol Sci. 2022 Oct 18;23(20):12463. doi: 10.3390/ijms232012463.

Abstract

Colorectal cancer (CRC) is a leading cause of death from cancer in Canada. Early detection of CRC remains crucial in managing disease prognosis and improving patient survival. It can also facilitate prevention, screening, and treatment before the disease progresses to a chronic stage. In this study, we developed a strategy for identifying colon cancer biomarkers from both gene expression and gene pair correlation. Using the RNA-Seq dataset TCGA-COAD, a panel of 71 genes, including the 20 most upregulated genes, 20 most downregulated genes and 31 genes involved in the most significantly altered gene pairs, were selected as potential biomarkers for colon cancer. This signature set of genes could be used for early diagnosis. Furthermore, this strategy could be applied to other types of cancer.

摘要

结直肠癌(CRC)是加拿大癌症死亡的主要原因。CRC 的早期检测对于管理疾病预后和提高患者生存率仍然至关重要。它还可以在疾病进展为慢性阶段之前促进预防、筛查和治疗。在这项研究中,我们开发了一种从基因表达和基因对相关性中识别结肠癌生物标志物的策略。使用 RNA-Seq 数据集 TCGA-COAD,选择了一组 71 个基因,包括 20 个上调最明显的基因、20 个下调最明显的基因和 31 个参与最显著改变的基因对的基因,作为结肠癌的潜在生物标志物。这个基因集可以用于早期诊断。此外,该策略可应用于其他类型的癌症。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e854/9604343/8f3f4a282705/ijms-23-12463-g001a.jpg

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