Normand Anne-Cécile, Moreno-Sabater Alicia, Jabet Arnaud, Hamane Samia, Cremer Geneviève, Foulet Françoise, Blaize Marion, Dellière Sarah, Bonnal Christine, Imbert Sébastien, Brun Sophie, Packeu Ann, Bretagne Stéphane, Piarroux Renaud
Service de Parasitologie-Mycologie, Hôpital La Pitié-Salpêtrière, AP-HP, 75013 Paris, France.
Service de Parasitologie-Mycologie, Hôpital Saint-Antoine, AP-HP, 75012 Paris, France.
J Fungi (Basel). 2022 Oct 19;8(10):1103. doi: 10.3390/jof8101103.
is an emerging pathogen which recently spread from India to Europe and that is more prone than other species of the complex to show resistance to terbinafine, resulting in the necessity of rapid identification. Here, we improved the online MSI-2 MALDI-TOF identification tool in order to identify . By multiplying the culture conditions (2 culture media and 6 stages of growth) prior to protein extractions for both test isolates and reference strains, we added 142 references corresponding to 12 strains inside the complex in the online MSI-2 database, of which 3 are strains. The resulting database was tested with 1566 spectra of 67 isolates from the complex, including 16 isolates. Using the newly improved MSI-2 database, we increased the identification rate of from 5% to 96%, with a sensitivity of 99.6%. We also identified specific peaks (6834/6845 daltons and 10,634/10,680 daltons) allowing for the distinction of from the other species of the complex. Our improved version of the MSI-2 application allows for the identification of . This will improve the epidemiological knowledge of the spread of this species throughout the world and will help to improve patient care.
是一种新兴病原体,最近从印度传播到欧洲,并且比该菌属的其他物种更易对特比萘芬表现出耐药性,因此需要快速鉴定。在此,我们改进了在线MSI-2基质辅助激光解吸电离飞行时间质谱鉴定工具以鉴定该菌。通过在对测试分离株和参考菌株进行蛋白质提取之前增加培养条件(2种培养基和6个生长阶段),我们在在线MSI-2数据库中添加了与该菌属内12个菌株相对应的142条参考谱图,其中3条是该菌的谱图。使用来自该菌属的67个分离株的1566个质谱图对所得数据库进行测试,其中包括16个该菌的分离株。使用新改进的MSI-2数据库,我们将该菌的鉴定率从5%提高到96%,灵敏度为99.6%。我们还鉴定出了特定峰(6834/6845道尔顿和10,634/10,680道尔顿),可用于将该菌与该菌属的其他物种区分开来。我们改进后的MSI-2应用程序能够鉴定该菌。这将提高对该物种在全球传播的流行病学认识,并有助于改善患者护理。