Bioinformatics and Computational Omics Lab (BioCOOL), Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran.
Biocenter, Julius-Maximilians-Universität Würzburg, Am Hubland, Würzburg, Germany.
J Mol Neurosci. 2022 Nov;72(11):2326-2337. doi: 10.1007/s12031-022-02068-w. Epub 2022 Oct 27.
Coronavirus disease 2019 (COVID-19) has emerged since December 2019 and was later characterized as a pandemic by WHO, imposing a major public health threat globally. Our study aimed to identify common signatures from different biological levels to enlighten the current unclear association between COVID-19 and Parkinson's disease (PD) as a number of possible links, and hypotheses were reported in the literature. We have analyzed transcriptome data from peripheral blood mononuclear cells (PBMCs) of both COVID-19 and PD patients, resulting in a total of 81 common differentially expressed genes (DEGs). The functional enrichment analysis of common DEGs are mostly involved in the complement system, type II interferon gamma (IFNG) signaling pathway, oxidative damage, microglia pathogen phagocytosis pathway, and GABAergic synapse. The protein-protein interaction network (PPIN) construction was carried out followed by hub detection, revealing 10 hub genes (MX1, IFI27, C1QC, C1QA, IFI6, NFIX, C1S, XAF1, IFI35, and ELANE). Some of the hub genes were associated with molecular mechanisms such as Lewy bodies-induced inflammation, microglia activation, and cytokine storm. We investigated regulatory elements of hub genes at transcription factor and miRNA levels. The major transcription factors regulating hub genes are SOX2, XAF1, RUNX1, MITF, and SPI1. We propose that these events may have important roles in the onset or progression of PD. To sum up, our analysis describes possible mechanisms linking COVID-19 and PD, elucidating some unknown clues in between.
新型冠状病毒病(COVID-19)自 2019 年 12 月出现,随后被世界卫生组织(WHO)定为大流行,在全球范围内构成重大公共卫生威胁。本研究旨在从不同的生物学层面识别共同特征,以阐明目前 COVID-19 与帕金森病(PD)之间不清楚的关联,因为文献中报道了许多可能的联系和假说。我们分析了 COVID-19 和 PD 患者外周血单核细胞(PBMC)的转录组数据,共得到 81 个共同差异表达基因(DEGs)。共同 DEGs 的功能富集分析主要涉及补体系统、II 型干扰素γ(IFNG)信号通路、氧化损伤、小胶质细胞病原体吞噬途径和 GABA 能突触。随后进行了蛋白质-蛋白质相互作用网络(PPIN)构建和枢纽检测,揭示了 10 个枢纽基因(MX1、IFI27、C1QC、C1QA、IFI6、NFIX、C1S、XAF1、IFI35 和 ELANE)。一些枢纽基因与分子机制有关,如路易体诱导的炎症、小胶质细胞激活和细胞因子风暴。我们研究了枢纽基因在转录因子和 miRNA 水平的调控元件。调节枢纽基因的主要转录因子是 SOX2、XAF1、RUNX1、MITF 和 SPI1。我们提出,这些事件可能在 PD 的发病或进展中具有重要作用。总之,我们的分析描述了 COVID-19 和 PD 之间可能的联系机制,阐明了两者之间的一些未知线索。