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鉴定免疫和缺氧风险分类器以评估宫颈癌的免疫微环境和预后

Identification of Immune and Hypoxia Risk Classifier to Estimate Immune Microenvironment and Prognosis in Cervical Cancer.

作者信息

Shi Yujing, Gao Qing, Liu Zeyuan, Shen Gefenqiang, Sun Xinchen, Di Xiaoke

机构信息

Department of Oncology, Jurong People's Hospital, Huayang Town, Jurong City, China.

Department of Radiation Oncology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.

出版信息

J Oncol. 2022 Oct 17;2022:6906380. doi: 10.1155/2022/6906380. eCollection 2022.

Abstract

PURPOSE

Cervical cancer (CC) is one of the most common gynecologic neoplasms. Hypoxia is an essential trigger for activating immunosuppressive activity and initiating malignant tumors. However, the determination of the role of immunity and hypoxia on the clinical outcome of CC patients remains unclear.

METHODS

The CC independent cohort were collected from TCGA database. Consensus cluster analysis was employed to determine a molecular subtype based on immune and hypoxia gene sets. Cox relevant analyses were utilized to set up a risk classifier for prognosis assessment. The underlying pathways of classifier genes were detected by GSEA. Moreover, we conducted CIBERSORT algorithm to mirror the immune status of CC samples.

RESULTS

We observed two cluster related to immune and hypoxia status and found the significant difference in outcome of patients between the two clusters. A total of 251 candidate genes were extracted from the two clusters and enrolled into Cox relevant analyses. Then, seven hub genes (CCL20, CXCL2, ITGA5, PLOD2, PTGS2, TGFBI, and VEGFA) were selected to create an immune and hypoxia-based risk classifier (IHBRC). The IHBRC can precisely distinguish patient risk and estimate clinical outcomes. In addition, IHBRC was closely bound up with tumor associated pathways such as hypoxia, P53 signaling and TGF signaling. IHBRC was also tightly associated with numerous types of immunocytes.

CONCLUSION

This academic research revealed that IHBRC can be served as predictor for prognosis assessment and cancer treatment estimation in CC.

摘要

目的

宫颈癌(CC)是最常见的妇科肿瘤之一。缺氧是激活免疫抑制活性和引发恶性肿瘤的重要触发因素。然而,免疫和缺氧对CC患者临床结局的作用仍不明确。

方法

从TCGA数据库收集CC独立队列。采用共识聚类分析基于免疫和缺氧基因集确定分子亚型。利用Cox相关分析建立预后评估风险分类器。通过基因集富集分析(GSEA)检测分类器基因的潜在通路。此外,我们进行CIBERSORT算法以反映CC样本的免疫状态。

结果

我们观察到与免疫和缺氧状态相关的两个聚类,并发现两个聚类患者的结局存在显著差异。从两个聚类中提取共251个候选基因并纳入Cox相关分析。然后,选择七个核心基因(CCL20、CXCL2、ITGA5、PLOD2、PTGS2、TGFBI和VEGFA)创建基于免疫和缺氧的风险分类器(IHBRC)。IHBRC能够精确区分患者风险并估计临床结局。此外,IHBRC与缺氧、P53信号传导和TGF信号传导等肿瘤相关通路密切相关。IHBRC还与多种免疫细胞紧密相关。

结论

本学术研究表明,IHBRC可作为CC预后评估和癌症治疗评估的预测指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9a1d/9593224/f74885b8e803/JO2022-6906380.001.jpg

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