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宫颈癌中的候选基因与信号通路:系统综述与整合生物信息学分析

Candidate Genes and Pathways in Cervical Cancer: A Systematic Review and Integrated Bioinformatic Analysis.

作者信息

Elias Marjanu Hikmah, Das Srijit, Abdul Hamid Nazefah

机构信息

Department of Basic Medical Sciences I, Faculty of Medicine & Health Sciences, Universiti Sains Islam Malaysia, Nilai 71800, Malaysia.

Department of Human & Clinical Anatomy, College of Medicine and Health Sciences, Sultan Qaboos University, Muscat 123, Oman.

出版信息

Cancers (Basel). 2023 Jan 30;15(3):853. doi: 10.3390/cancers15030853.

Abstract

Cervical cancer is the leading cause of cancer-related death among women in developing countries. However, no comprehensive molecular mechanism for cervical cancer has been established, as many studies were small-cohort studies conducted with small sample sizes. A thorough literature search was performed using the PubMed, Scopus, EBSCOhost, and Science Direct databases. Medical Subject Heading (MeSH) terms such as "Uterine Cervical Neoplasms" and "gene expression" were used as the keywords in all fields. A total of 4027 studies were retrieved, and only clinical studies, which used the microarray method to identify differentially expressed genes (DEGs) in the cervical tissue of cervical cancer patients, were selected. Following the screening, 6 studies were selected and 1128 DEGs were extracted from the data. Sixty-two differentially expressed genes from at least two studies were selected for further analysis by DAVID, STRING, and Cytoscape software. In cervical cancer pathogenesis, three significant clusters with high intermolecular interactions from the Protein-Protein Interaction (PPI) network complex revealed three major molecular mechanisms, including cell signaling, cell cycle, and cell differentiation. Subsequently, eight genes were chosen as the candidate genes based on their involvement in the relevant gene ontology (GO) and their interaction with other genes in the PPI network through undirected first neighbor nodes. The present systematic review improves our understanding of the molecular mechanism of cervical cancer and the proposed genes that can be used to expand the biomarker panel in the screening for cervical cancer. The targeted genes may be beneficial for the development of better treatment strategies.

摘要

宫颈癌是发展中国家女性癌症相关死亡的主要原因。然而,由于许多研究是小样本量的小队列研究,尚未建立全面的宫颈癌分子机制。使用PubMed、Scopus、EBSCOhost和ScienceDirect数据库进行了全面的文献检索。在所有字段中使用“子宫颈肿瘤”和“基因表达”等医学主题词(MeSH)作为关键词。共检索到4027项研究,仅选择了使用微阵列方法鉴定宫颈癌患者宫颈组织中差异表达基因(DEG)的临床研究。筛选后,选择了6项研究,并从数据中提取了1128个DEG。通过DAVID、STRING和Cytoscape软件选择了至少两项研究中的62个差异表达基因进行进一步分析。在宫颈癌发病机制中,来自蛋白质-蛋白质相互作用(PPI)网络复合体的具有高分子间相互作用的三个显著簇揭示了三种主要分子机制,包括细胞信号传导、细胞周期和细胞分化。随后,基于其参与相关基因本体(GO)以及通过无向第一邻接节点与PPI网络中的其他基因的相互作用,选择了八个基因作为候选基因。本系统评价提高了我们对宫颈癌分子机制的理解以及所提出的可用于扩大宫颈癌筛查生物标志物组的基因。这些靶向基因可能有利于制定更好的治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b8e8/9913780/bb6f0ebf673a/cancers-15-00853-g001.jpg

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